About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
99453-99660
(+)
cobalamin
99808-100006 (+)
cbtB
Cobalt transporter; subunit CbtB
NH8B_0087
Operon
DOOR ID:
922193
NH8B_0087
(cbtB)
,
NH8B_0088
(cbtA)
View Structure
2
350806-350954
(-)
FMN
350071-350704 (-)
NH8B_0322
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
NH8B_0322
Single gene
DOOR ID:
3273141
NH8B_0322
View Structure
3
635910-635980
(+)
SAH
636044-637457 (+)
NH8B_0633
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
NH8B_0633
Single gene
DOOR ID:
3273236
NH8B_0633
View Structure
4
865455-865518
(-)
fluoride
864031-865366 (-)
NH8B_0842
Voltage-gated chloride channel
NH8B_0842
Single gene
DOOR ID:
3273344
NH8B_0842
View Structure
5
1062525-1062599
(+)
sam-alpha
1062608-1063160 (+)
NH8B_1052
Sel1 repeat-containing protein
NH8B_1052
Single gene
DOOR ID:
3273424
NH8B_1052
View Structure
6
1338217-1338395
(-)
yybP-ykoY
1337643-1338207 (-)
NH8B_1311
NH8B_1311
Single gene
DOOR ID:
3273524
NH8B_1311
View Structure
7
1460042-1460130
(-)
glycine
1459700-1459940 (+)
glyA
NH8B_1413
Single gene
DOOR ID:
3273581
NH8B_1413
View Structure
8
1931277-1931441
(-)
cobalamin
1930121-1931174 (-)
NH8B_1842
Nickel/cobalt efflux system
NH8B_1842
Operon
DOOR ID:
922517
NH8B_1839
(chlD)
,
NH8B_1840
(cobN)
,
NH8B_1841,
NH8B_1842
View Structure
9
2116960-2117072
(+)
yybP-ykoY
2117165-2118170 (+)
NH8B_2019
Sodium/calcium exchanger membrane region
NH8B_2019
Single gene
DOOR ID:
3273858
NH8B_2019
View Structure
10
2331956-2332042
(-)
glycine
2331354-2331729 (-)
NH8B_2220
Glycine cleavage system H protein
NH8B_2220
Operon
DOOR ID:
922587
NH8B_2218
(glyA)
,
NH8B_2219
(gcvP)
,
NH8B_2220
View Structure
11
2839223-2839427
(-)
cobalamin
2838429-2839185 (-)
NH8B_2700
Cob(II)yrinic acid a;c-diamide reductase
NH8B_2700
Single gene
DOOR ID:
3274142
NH8B_2700
View Structure
12
3363137-3363233
(-)
TPP
3362017-3363028 (-)
NH8B_3192
ABC transporter; periplasmic binding protein; thiB subfamily
NH8B_3192
Single gene
DOOR ID:
3274337
NH8B_3192
View Structure
13
3438310-3438417
(-)
glycine
3437189-3438278 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
NH8B_3256
Operon
DOOR ID:
922770
NH8B_3255,
NH8B_3256
(gcvT)
View Structure
14
3438437-3438532
(-)
glycine
3437189-3438278 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
NH8B_3256
Operon
DOOR ID:
922770
NH8B_3255,
NH8B_3256
(gcvT)
View Structure
15
4239364-4239512
(+)
TPP
4239604-4241515 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
NH8B_4048
Single gene
DOOR ID:
3274701
NH8B_4048
(thiC)
View Structure
Genome:
Pseudogulbenkiania sp. NH8B
(
NC_016002.1
);
Phylum:
Betaproteobacteria
a:16:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016002.1";i:2;s:27:"Pseudogulbenkiania sp. NH8B";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:11:"99453-99660";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:12:"99808-100006";i:10;s:1:"+";i:11;s:4:"cbtB";i:12;s:32:"Cobalt transporter; subunit CbtB";i:13;s:9:"NH8B_0087";i:14;s:6:"Operon";i:15;s:6:"922193";i:16;s:31:"NH8B_0087(cbtB);NH8B_0088(cbtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016002.1";i:2;s:27:"Pseudogulbenkiania sp. NH8B";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"350806-350954";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"350071-350704";i:10;s:1:"-";i:11;s:9:"NH8B_0322";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"NH8B_0322";i:14;s:11:"Single gene";i:15;s:7:"3273141";i:16;s:9:"NH8B_0322";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016002.1";i:2;s:27:"Pseudogulbenkiania sp. NH8B";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"635910-635980";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"636044-637457";i:10;s:1:"+";i:11;s:9:"NH8B_0633";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:9:"NH8B_0633";i:14;s:11:"Single gene";i:15;s:7:"3273236";i:16;s:9:"NH8B_0633";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016002.1";i:2;s:27:"Pseudogulbenkiania sp. NH8B";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"865455-865518";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"864031-865366";i:10;s:1:"-";i:11;s:9:"NH8B_0842";i:12;s:30:"Voltage-gated chloride channel";i:13;s:9:"NH8B_0842";i:14;s:11:"Single gene";i:15;s:7:"3273344";i:16;s:9:"NH8B_0842";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016002.1";i:2;s:27:"Pseudogulbenkiania sp. NH8B";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1062525-1062599";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"1062608-1063160";i:10;s:1:"+";i:11;s:9:"NH8B_1052";i:12;s:30:"Sel1 repeat-containing protein";i:13;s:9:"NH8B_1052";i:14;s:11:"Single gene";i:15;s:7:"3273424";i:16;s:9:"NH8B_1052";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016002.1";i:2;s:27:"Pseudogulbenkiania sp. NH8B";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1338217-1338395";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1337643-1338207";i:10;s:1:"-";i:11;s:9:"NH8B_1311";i:12;s:0:"";i:13;s:9:"NH8B_1311";i:14;s:11:"Single gene";i:15;s:7:"3273524";i:16;s:9:"NH8B_1311";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016002.1";i:2;s:27:"Pseudogulbenkiania sp. NH8B";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1460042-1460130";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1459700-1459940";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:0:"";i:13;s:9:"NH8B_1413";i:14;s:11:"Single gene";i:15;s:7:"3273581";i:16;s:9:"NH8B_1413";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016002.1";i:2;s:27:"Pseudogulbenkiania sp. NH8B";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1931277-1931441";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1930121-1931174";i:10;s:1:"-";i:11;s:9:"NH8B_1842";i:12;s:27:"Nickel/cobalt efflux system";i:13;s:9:"NH8B_1842";i:14;s:6:"Operon";i:15;s:6:"922517";i:16;s:51:"NH8B_1839(chlD);NH8B_1840(cobN);NH8B_1841;NH8B_1842";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016002.1";i:2;s:27:"Pseudogulbenkiania sp. NH8B";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2116960-2117072";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2117165-2118170";i:10;s:1:"+";i:11;s:9:"NH8B_2019";i:12;s:40:"Sodium/calcium exchanger membrane region";i:13;s:9:"NH8B_2019";i:14;s:11:"Single gene";i:15;s:7:"3273858";i:16;s:9:"NH8B_2019";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016002.1";i:2;s:27:"Pseudogulbenkiania sp. NH8B";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2331956-2332042";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2331354-2331729";i:10;s:1:"-";i:11;s:9:"NH8B_2220";i:12;s:33:"Glycine cleavage system H protein";i:13;s:9:"NH8B_2220";i:14;s:6:"Operon";i:15;s:6:"922587";i:16;s:41:"NH8B_2218(glyA);NH8B_2219(gcvP);NH8B_2220";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016002.1";i:2;s:27:"Pseudogulbenkiania sp. NH8B";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2839223-2839427";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2838429-2839185";i:10;s:1:"-";i:11;s:9:"NH8B_2700";i:12;s:40:"Cob(II)yrinic acid a;c-diamide reductase";i:13;s:9:"NH8B_2700";i:14;s:11:"Single gene";i:15;s:7:"3274142";i:16;s:9:"NH8B_2700";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_016002.1";i:2;s:27:"Pseudogulbenkiania sp. NH8B";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3363137-3363233";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3362017-3363028";i:10;s:1:"-";i:11;s:9:"NH8B_3192";i:12;s:60:"ABC transporter; periplasmic binding protein; thiB subfamily";i:13;s:9:"NH8B_3192";i:14;s:11:"Single gene";i:15;s:7:"3274337";i:16;s:9:"NH8B_3192";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_016002.1";i:2;s:27:"Pseudogulbenkiania sp. NH8B";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3438310-3438417";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3437189-3438278";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"NH8B_3256";i:14;s:6:"Operon";i:15;s:6:"922770";i:16;s:25:"NH8B_3255;NH8B_3256(gcvT)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_016002.1";i:2;s:27:"Pseudogulbenkiania sp. NH8B";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3438437-3438532";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3437189-3438278";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"NH8B_3256";i:14;s:6:"Operon";i:15;s:6:"922770";i:16;s:25:"NH8B_3255;NH8B_3256(gcvT)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_016002.1";i:2;s:27:"Pseudogulbenkiania sp. NH8B";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4239364-4239512";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4239604-4241515";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"NH8B_4048";i:14;s:11:"Single gene";i:15;s:7:"3274701";i:16;s:15:"NH8B_4048(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
