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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
475214-475295
(+)
ZMP-ZTP
475576-477805 (+)
RHOM_02190
Formate acetyltransferase
RHOM_02190
Single gene
DOOR ID:
3270747
RHOM_02190
View Structure
2
492522-492623
(+)
SAM
492752-493934 (+)
RHOM_02275
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
RHOM_02275
Single gene
DOOR ID:
3270751
RHOM_02275
View Structure
3
618325-618487
(+)
FMN
618522-618702 (+)
RHOM_02850
RHOM_02850
Operon
DOOR ID:
920670
RHOM_02850,
RHOM_02855
View Structure
4
643681-643778
(+)
THF
643843-644422 (+)
RHOM_02960
RHOM_02960
Single gene
DOOR ID:
3270799
RHOM_02960
View Structure
5
848684-848835
(+)
glmS
848967-850737 (+)
RHOM_03930
Glutamine--fructose-6-phosphate aminotransferase [isomerizing]
RHOM_03930
Operon
DOOR ID:
920719
RHOM_03925,
RHOM_03930
View Structure
6
1167307-1167481
(+)
lysine
1167626-1168517 (+)
RHOM_05340
4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase)
RHOM_05340
Operon
DOOR ID:
920782
RHOM_05340,
RHOM_05345,
RHOM_05350
View Structure
7
1963857-1964086
(-)
cobalamin
1962094-1963726 (-)
RHOM_08995
Anaerobic cobalt chelatase cbiK
RHOM_08995
Operon
DOOR ID:
920929
RHOM_08965,
RHOM_08970,
RHOM_08975,
RHOM_08980,
RHOM_08985,
RHOM_08990,
RHOM_08995
View Structure
8
1992823-1992871
(-)
PreQ1
1992299-1992815 (-)
RHOM_09135
RHOM_09135
Single gene
DOOR ID:
3271116
RHOM_09135
View Structure
9
2431186-2431294
(-)
TPP
2428041-2429703 (-)
RHOM_11180
RHOM_11180
Single gene
DOOR ID:
3271224
RHOM_11180
View Structure
10
2920250-2920353
(-)
TPP
2919296-2920097 (-)
RHOM_13425
Phosphomethylpyrimidine kinase
RHOM_13425
Operon
DOOR ID:
921128
RHOM_13415,
RHOM_13420,
RHOM_13425
View Structure
11
3045557-3045658
(+)
TPP
3045703-3046387 (+)
RHOM_14100
Proton-coupled thiamine transporter YuaJ
RHOM_14100
Single gene
DOOR ID:
3271400
RHOM_14100
View Structure
12
3575756-3575870
(-)
FMN
3574351-3575479 (-)
RHOM_16840
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
RHOM_16840
Operon
DOOR ID:
921268
RHOM_16820,
RHOM_16825,
RHOM_16830,
RHOM_16835,
RHOM_16840
View Structure
Genome:
Roseburia hominis A2-183
(
NC_015977.1
);
Phylum:
Firmicutes
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015977.1";i:2;s:25:"Roseburia hominis A2-183 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"475214-475295";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"475576-477805";i:10;s:1:"+";i:11;s:10:"RHOM_02190";i:12;s:25:"Formate acetyltransferase";i:13;s:10:"RHOM_02190";i:14;s:11:"Single gene";i:15;s:7:"3270747";i:16;s:10:"RHOM_02190";i:17;s:43:"carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015977.1";i:2;s:25:"Roseburia hominis A2-183 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"492522-492623";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"492752-493934";i:10;s:1:"+";i:11;s:10:"RHOM_02275";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:10:"RHOM_02275";i:14;s:11:"Single gene";i:15;s:7:"3270751";i:16;s:10:"RHOM_02275";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015977.1";i:2;s:25:"Roseburia hominis A2-183 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"618325-618487";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"618522-618702";i:10;s:1:"+";i:11;s:10:"RHOM_02850";i:12;s:0:"";i:13;s:10:"RHOM_02850";i:14;s:6:"Operon";i:15;s:6:"920670";i:16;s:21:"RHOM_02850;RHOM_02855";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015977.1";i:2;s:25:"Roseburia hominis A2-183 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"643681-643778";i:6;s:1:"+";i:7;s:3:"THF";i:8;s:0:"";i:9;s:13:"643843-644422";i:10;s:1:"+";i:11;s:10:"RHOM_02960";i:12;s:0:"";i:13;s:10:"RHOM_02960";i:14;s:11:"Single gene";i:15;s:7:"3270799";i:16;s:10:"RHOM_02960";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015977.1";i:2;s:25:"Roseburia hominis A2-183 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"848684-848835";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"848967-850737";i:10;s:1:"+";i:11;s:10:"RHOM_03930";i:12;s:62:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing]";i:13;s:10:"RHOM_03930";i:14;s:6:"Operon";i:15;s:6:"920719";i:16;s:21:"RHOM_03925;RHOM_03930";i:17;s:57:"carbohydrate derivative biosynthetic process [GO:1901137]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015977.1";i:2;s:25:"Roseburia hominis A2-183 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1167307-1167481";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1167626-1168517";i:10;s:1:"+";i:11;s:10:"RHOM_05340";i:12;s:58:"4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) ";i:13;s:10:"RHOM_05340";i:14;s:6:"Operon";i:15;s:6:"920782";i:16;s:32:"RHOM_05340;RHOM_05345;RHOM_05350";i:17;s:111:"diaminopimelate biosynthetic process [GO:0019877]; lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015977.1";i:2;s:25:"Roseburia hominis A2-183 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1963857-1964086";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1962094-1963726";i:10;s:1:"-";i:11;s:10:"RHOM_08995";i:12;s:31:"Anaerobic cobalt chelatase cbiK";i:13;s:10:"RHOM_08995";i:14;s:6:"Operon";i:15;s:6:"920929";i:16;s:76:"RHOM_08965;RHOM_08970;RHOM_08975;RHOM_08980;RHOM_08985;RHOM_08990;RHOM_08995";i:17;s:53:"anaerobic cobalamin biosynthetic process [GO:0019251]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015977.1";i:2;s:25:"Roseburia hominis A2-183 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1992823-1992871";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1992299-1992815";i:10;s:1:"-";i:11;s:10:"RHOM_09135";i:12;s:0:"";i:13;s:10:"RHOM_09135";i:14;s:11:"Single gene";i:15;s:7:"3271116";i:16;s:10:"RHOM_09135";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015977.1";i:2;s:25:"Roseburia hominis A2-183 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2431186-2431294";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2428041-2429703";i:10;s:1:"-";i:11;s:10:"RHOM_11180";i:12;s:0:"";i:13;s:10:"RHOM_11180";i:14;s:11:"Single gene";i:15;s:7:"3271224";i:16;s:10:"RHOM_11180";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015977.1";i:2;s:25:"Roseburia hominis A2-183 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2920250-2920353";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2919296-2920097";i:10;s:1:"-";i:11;s:10:"RHOM_13425";i:12;s:30:"Phosphomethylpyrimidine kinase";i:13;s:10:"RHOM_13425";i:14;s:6:"Operon";i:15;s:6:"921128";i:16;s:32:"RHOM_13415;RHOM_13420;RHOM_13425";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015977.1";i:2;s:25:"Roseburia hominis A2-183 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"3045557-3045658";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3045703-3046387";i:10;s:1:"+";i:11;s:10:"RHOM_14100";i:12;s:40:"Proton-coupled thiamine transporter YuaJ";i:13;s:10:"RHOM_14100";i:14;s:11:"Single gene";i:15;s:7:"3271400";i:16;s:10:"RHOM_14100";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015977.1";i:2;s:25:"Roseburia hominis A2-183 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"3575756-3575870";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3574351-3575479";i:10;s:1:"-";i:11;s:10:"RHOM_16840";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:10:"RHOM_16840";i:14;s:6:"Operon";i:15;s:6:"921268";i:16;s:54:"RHOM_16820;RHOM_16825;RHOM_16830;RHOM_16835;RHOM_16840";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}}