About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
9572-9671
(+)
glycine
9818-11030 (+)
dadA
D-amino-acid dehydrogenase
SLG_00130
Single gene
DOOR ID:
3269176
SLG_00130
(dadA)
View Structure
2
329354-329558
(-)
cobalamin
328442-329192 (-)
SLG_03180
SLG_03180
Single gene
DOOR ID:
3269290
SLG_03180
View Structure
3
354592-354702
(-)
TPP
354111-354531 (-)
SLG_03480
SLG_03480
Operon
DOOR ID:
1200264
SLG_03480,
SLG_03470
(thiC)
View Structure
4
431488-431561
(+)
c-di-GMP-I
431770-441682 (+)
SLG_04220
Putative autotransporter YapH
SLG_04220
single gene
DOOR ID:
3269334
SLG_04220
View Structure
5
2445047-2445206
(-)
yybP-ykoY
2444449-2445019 (-)
SLG_22610
Conserved hypothetical membrane protein
SLG_22610
Single gene
DOOR ID:
3269999
SLG_22610
View Structure
6
2841135-2841246
(-)
ykkC-yxkD
2839530-2840139 (-)
SLG_26310
SLG_26310
Single gene
DOOR ID:
3270130
SLG_26310
View Structure
7
3312986-3313208
(-)
cobalamin
3310997-3312875 (-)
btuB
Putative vitamin B12 transporter BtuB
SLG_30670
Operon
DOOR ID:
1200848
SLG_30630,
SLG_30640,
SLG_30650,
SLG_30660,
SLG_30670
(btuB)
View Structure
Genome:
Sphingobium sp. SYK-6
(
NC_015976.1
);
Phylum:
Alphaproteobacteria
a:8:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015976.1";i:2;s:22:"Sphingobium sp. SYK-6 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:9:"9572-9671";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:10:"9818-11030";i:10;s:1:"+";i:11;s:4:"dadA";i:12;s:27:"D-amino-acid dehydrogenase ";i:13;s:9:"SLG_00130";i:14;s:11:"Single gene";i:15;s:7:"3269176";i:16;s:15:"SLG_00130(dadA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015976.1";i:2;s:22:"Sphingobium sp. SYK-6 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"329354-329558";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"328442-329192";i:10;s:1:"-";i:11;s:9:"SLG_03180";i:12;s:0:"";i:13;s:9:"SLG_03180";i:14;s:11:"Single gene";i:15;s:7:"3269290";i:16;s:9:"SLG_03180";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015976.1";i:2;s:22:"Sphingobium sp. SYK-6 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"354592-354702";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"354111-354531";i:10;s:1:"-";i:11;s:9:"SLG_03480";i:12;s:0:"";i:13;s:9:"SLG_03480";i:14;s:6:"Operon";i:15;s:7:"1200264";i:16;s:25:"SLG_03480;SLG_03470(thiC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015976.1";i:2;s:22:"Sphingobium sp. SYK-6 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"431488-431561";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"431770-441682";i:10;s:1:"+";i:11;s:9:"SLG_04220";i:12;s:29:"Putative autotransporter YapH";i:13;s:9:"SLG_04220";i:14;s:11:"single gene";i:15;s:7:"3269334";i:16;s:9:"SLG_04220";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015976.1";i:2;s:22:"Sphingobium sp. SYK-6 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2445047-2445206";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2444449-2445019";i:10;s:1:"-";i:11;s:9:"SLG_22610";i:12;s:39:"Conserved hypothetical membrane protein";i:13;s:9:"SLG_22610";i:14;s:11:"Single gene";i:15;s:7:"3269999";i:16;s:9:"SLG_22610";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015976.1";i:2;s:22:"Sphingobium sp. SYK-6 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2841135-2841246";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"2839530-2840139";i:10;s:1:"-";i:11;s:9:"SLG_26310";i:12;s:0:"";i:13;s:9:"SLG_26310";i:14;s:11:"Single gene";i:15;s:7:"3270130";i:16;s:9:"SLG_26310";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015976.1";i:2;s:22:"Sphingobium sp. SYK-6 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3312986-3313208";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3310997-3312875";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:37:"Putative vitamin B12 transporter BtuB";i:13;s:9:"SLG_30670";i:14;s:6:"Operon";i:15;s:7:"1200848";i:16;s:55:"SLG_30630;SLG_30640;SLG_30650;SLG_30660;SLG_30670(btuB)";i:17;s:0:"";i:18;s:15:"View Structure ";}}