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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
184088-184135
(-)
PreQ1
183585-184077 (-)
queT
Hypothetical membrane protein
LRC_01630
Operon
DOOR ID:
919992
LRC_01610,
LRC_01620,
LRC_01630
(queT)
View Structure
2
269544-269724
(+)
lysine
269834-271280 (+)
lysP
Lysine-specific permease
LRC_02530
Single gene
DOOR ID:
3268657
LRC_02530
(lysP)
View Structure
3
539694-539793
(+)
purine
539876-540455 (+)
gpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
LRC_04980
Operon
DOOR ID:
920067
LRC_04980
(gpt)
,
LRC_04990
(pbuX)
View Structure
4
1243524-1243643
(-)
FMN
1242819-1243398 (-)
LRC_11910
Riboflavin transporter
LRC_11910
Single gene
DOOR ID:
3268934
LRC_11910
View Structure
5
1501780-1501869
(-)
SMK_box
1498170-1500348 (-)
lysM
Autolysin
LRC_14460
Single gene
DOOR ID:
3269000
LRC_14460
(lysM)
View Structure
6
1787386-1787474
(-)
TPP
1786716-1787349 (-)
LRC_17320
ABC transporter; permease
LRC_17320
Operon
DOOR ID:
920319
LRC_17300,
LRC_17310,
LRC_17320
View Structure
7
1913093-1913194
(+)
THF
1913257-1913812 (+)
LRC_18620
Conserved hypothetical secreted membrane protein
LRC_18620
Single gene
DOOR ID:
3269130
LRC_18620
View Structure
Genome:
Lactobacillus ruminis ATCC 27782
(
NC_015975.1
);
Phylum:
Firmicutes
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