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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
248558-248671
(-)
TPP
246583-248479 (-)
Entas_0229
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Entas_0229
Operon
DOOR ID:
919063
Entas_0224,
Entas_0225,
Entas_0226,
Entas_0227,
Entas_0228,
Entas_0229
View Structure
2
398727-398773
(+)
mini-ykkC
398800-399118 (+)
Entas_0371
Entas_0371
Single gene
DOOR ID:
3267041
Entas_0371
View Structure
3
501640-501754
(+)
Mg sensor
501851-504560 (+)
Entas_0467
Magnesium-translocating P-type ATPase
Entas_0467
Single gene
DOOR ID:
3267086
Entas_0467
View Structure
4
718678-718778
(-)
TPP
717662-718646 (-)
Entas_0668
Thiamine ABC transporter; periplasmic binding protein
Entas_0668
Operon
DOOR ID:
919153
Entas_0666,
Entas_0667,
Entas_0668
View Structure
5
1370075-1370209
(+)
MOCO
1371210-1371723 (+)
Entas_1256
Molybdenum cofactor biosynthesis protein B
Entas_1256
Operon
DOOR ID:
919282
Entas_1255,
Entas_1256,
Entas_1257,
Entas_1258,
Entas_1259,
Entas_1260
View Structure
6
1666732-1666901
(-)
ykoK
1665669-1666671 (-)
Entas_1522
MgtE integral membrane region
Entas_1522
Single gene
DOOR ID:
3267440
Entas_1522
View Structure
7
2137130-2137228
(+)
ykkC-yxkD
2137284-2138343 (+)
Entas_1990
ABC transporter periplasmic binding protein; urea carboxylase region
Entas_1990
Operon
DOOR ID:
919411
Entas_1990,
Entas_1991,
Entas_1992,
Entas_1993,
Entas_1994
View Structure
8
2141398-2141445
(+)
mini-ykkC
2141463-2145066 (+)
Entas_1995
Entas_1995
Operon
DOOR ID:
919412
Entas_1995,
Entas_1996
View Structure
9
2724398-2724596
(+)
yybP-ykoY
2724599-2725166 (+)
Entas_2528
Putative manganese efflux pump MntP
Entas_2528
Single gene
DOOR ID:
3267883
Entas_2528
View Structure
10
3071889-3071985
(-)
TPP
3071082-3071853 (-)
Entas_2871
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Entas_2871
Operon
DOOR ID:
919567
Entas_2869,
Entas_2870,
Entas_2871
View Structure
11
3727533-3727658
(-)
ydaO-yuaA
3726421-3727465 (+)
Entas_3473
Peptidase M28
Entas_3473
Single gene
DOOR ID:
3268178
Entas_3473
View Structure
12
3998980-3999130
(-)
FMN
3998219-3998873 (-)
Entas_3724
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Entas_3724
Single gene
DOOR ID:
3268265
Entas_3724
View Structure
13
4628828-4629004
(-)
cobalamin
4626908-4628762 (-)
Entas_4307
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
Entas_4307
Operon
DOOR ID:
919857
Entas_4306,
Entas_4307
View Structure
Genome:
Enterobacter asburiae LF7a
(
NC_015968.1
);
Phylum:
Gammaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015968.1";i:2;s:27:"Enterobacter asburiae LF7a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"248558-248671";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"246583-248479";i:10;s:1:"-";i:11;s:10:"Entas_0229";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Entas_0229";i:14;s:6:"Operon";i:15;s:6:"919063";i:16;s:65:"Entas_0224;Entas_0225;Entas_0226;Entas_0227;Entas_0228;Entas_0229";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015968.1";i:2;s:27:"Enterobacter asburiae LF7a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"398727-398773";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"398800-399118";i:10;s:1:"+";i:11;s:10:"Entas_0371";i:12;s:0:"";i:13;s:10:"Entas_0371";i:14;s:11:"Single gene";i:15;s:7:"3267041";i:16;s:10:"Entas_0371";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015968.1";i:2;s:27:"Enterobacter asburiae LF7a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"501640-501754";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:13:"501851-504560";i:10;s:1:"+";i:11;s:10:"Entas_0467";i:12;s:37:"Magnesium-translocating P-type ATPase";i:13;s:10:"Entas_0467";i:14;s:11:"Single gene";i:15;s:7:"3267086";i:16;s:10:"Entas_0467";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015968.1";i:2;s:27:"Enterobacter asburiae LF7a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"718678-718778";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"717662-718646";i:10;s:1:"-";i:11;s:10:"Entas_0668";i:12;s:53:"Thiamine ABC transporter; periplasmic binding protein";i:13;s:10:"Entas_0668";i:14;s:6:"Operon";i:15;s:6:"919153";i:16;s:32:"Entas_0666;Entas_0667;Entas_0668";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015968.1";i:2;s:27:"Enterobacter asburiae LF7a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1370075-1370209";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1371210-1371723";i:10;s:1:"+";i:11;s:10:"Entas_1256";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:10:"Entas_1256";i:14;s:6:"Operon";i:15;s:6:"919282";i:16;s:65:"Entas_1255;Entas_1256;Entas_1257;Entas_1258;Entas_1259;Entas_1260";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015968.1";i:2;s:27:"Enterobacter asburiae LF7a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1666732-1666901";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1665669-1666671";i:10;s:1:"-";i:11;s:10:"Entas_1522";i:12;s:29:"MgtE integral membrane region";i:13;s:10:"Entas_1522";i:14;s:11:"Single gene";i:15;s:7:"3267440";i:16;s:10:"Entas_1522";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015968.1";i:2;s:27:"Enterobacter asburiae LF7a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2137130-2137228";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"2137284-2138343";i:10;s:1:"+";i:11;s:10:"Entas_1990";i:12;s:68:"ABC transporter periplasmic binding protein; urea carboxylase region";i:13;s:10:"Entas_1990";i:14;s:6:"Operon";i:15;s:6:"919411";i:16;s:54:"Entas_1990;Entas_1991;Entas_1992;Entas_1993;Entas_1994";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015968.1";i:2;s:27:"Enterobacter asburiae LF7a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2141398-2141445";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2141463-2145066";i:10;s:1:"+";i:11;s:10:"Entas_1995";i:12;s:0:"";i:13;s:10:"Entas_1995";i:14;s:6:"Operon";i:15;s:6:"919412";i:16;s:21:"Entas_1995;Entas_1996";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015968.1";i:2;s:27:"Enterobacter asburiae LF7a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2724398-2724596";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2724599-2725166";i:10;s:1:"+";i:11;s:10:"Entas_2528";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:10:"Entas_2528";i:14;s:11:"Single gene";i:15;s:7:"3267883";i:16;s:10:"Entas_2528";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015968.1";i:2;s:27:"Enterobacter asburiae LF7a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3071889-3071985";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3071082-3071853";i:10;s:1:"-";i:11;s:10:"Entas_2871";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"Entas_2871";i:14;s:6:"Operon";i:15;s:6:"919567";i:16;s:32:"Entas_2869;Entas_2870;Entas_2871";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015968.1";i:2;s:27:"Enterobacter asburiae LF7a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3727533-3727658";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3726421-3727465";i:10;s:1:"+";i:11;s:10:"Entas_3473";i:12;s:13:"Peptidase M28";i:13;s:10:"Entas_3473";i:14;s:11:"Single gene";i:15;s:7:"3268178";i:16;s:10:"Entas_3473";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015968.1";i:2;s:27:"Enterobacter asburiae LF7a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3998980-3999130";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3998219-3998873";i:10;s:1:"-";i:11;s:10:"Entas_3724";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"Entas_3724";i:14;s:11:"Single gene";i:15;s:7:"3268265";i:16;s:10:"Entas_3724";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_015968.1";i:2;s:27:"Enterobacter asburiae LF7a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4628828-4629004";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4626908-4628762";i:10;s:1:"-";i:11;s:10:"Entas_4307";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"Entas_4307";i:14;s:6:"Operon";i:15;s:6:"919857";i:16;s:21:"Entas_4306;Entas_4307";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}