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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
24375-24489
(+)
FMN
24573-25656 (+)
Thewi_0021
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Thewi_0021
Operon
DOOR ID:
917461
Thewi_0021,
Thewi_0022,
Thewi_0023,
Thewi_0024
View Structure
2
62539-62598
(+)
fluoride
62658-63060 (+)
Thewi_0062
Putative fluoride ion transporter CrcB
Thewi_0062
Operon
DOOR ID:
917466
Thewi_0062,
Thewi_0063
View Structure
3
320096-320201
(-)
glycine
318840-319947 (-)
Thewi_0294
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Thewi_0294
Operon
DOOR ID:
917515
Thewi_0291,
Thewi_0292,
Thewi_0293,
Thewi_0294
View Structure
4
407872-407995
(+)
MOCO
408196-409075 (+)
Thewi_0382
Extracellular solute-binding protein family 1
Thewi_0382
Single gene
DOOR ID:
3264725
Thewi_0382
View Structure
5
459512-459705
(+)
cobalamin
459819-460767 (+)
Thewi_0429
ABC-type transporter; periplasmic subunit
Thewi_0429
Operon
DOOR ID:
917541
Thewi_0429,
Thewi_0430,
Thewi_0431,
Thewi_0432,
Thewi_0433
View Structure
6
577887-577991
(+)
SAM
578049-579237 (+)
Thewi_0557
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Thewi_0557
Single gene
DOOR ID:
3264769
Thewi_0557
View Structure
7
629971-630089
(+)
FMN
630181-630766 (+)
Thewi_0605
Riboflavin transporter
Thewi_0605
Single gene
DOOR ID:
3264788
Thewi_0605
View Structure
8
688254-688355
(+)
purine
688496-689951 (+)
Thewi_0666
Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPD) (IMPDH) (05)
Thewi_0666
Operon
DOOR ID:
917582
Thewi_0666,
Thewi_0667
View Structure
9
691591-691692
(+)
purine
691877-693260 (+)
Thewi_0668
Xanthine/uracil/vitamin C permease
Thewi_0668
Operon
DOOR ID:
917583
Thewi_0668,
Thewi_0669,
Thewi_0670,
Thewi_0671,
Thewi_0672,
Thewi_0673,
Thewi_0674,
Thewi_0675,
Thewi_0676,
Thewi_0677,
Thewi_0678
View Structure
10
691677-691777
(+)
ykkC-yxkD
691877-693260 (+)
Thewi_0668
Xanthine/uracil/vitamin C permease
Thewi_0668
Operon
DOOR ID:
917583
Thewi_0668,
Thewi_0669,
Thewi_0670,
Thewi_0671,
Thewi_0672,
Thewi_0673,
Thewi_0674,
Thewi_0675,
Thewi_0676,
Thewi_0677,
Thewi_0678
View Structure
11
756132-756234
(+)
TPP
756291-757086 (+)
Thewi_0724
Phosphomethylpyrimidine kinase
Thewi_0724
Operon
DOOR ID:
917594
Thewi_0724,
Thewi_0725,
Thewi_0726,
Thewi_0727,
Thewi_0728
View Structure
12
883175-883353
(+)
lysine
883468-883855 (+)
Thewi_0849
Acyl-CoA hydrolase
Thewi_0849
Operon
DOOR ID:
917615
Thewi_0849,
Thewi_0850,
Thewi_0851,
Thewi_0852,
Thewi_0853,
Thewi_0854,
Thewi_0855,
Thewi_0856
View Structure
13
948288-948375
(+)
c-di-GMP-I
948428-949730 (+)
Thewi_0909
Sigma 54 interacting domain protein
Thewi_0909
single gene
DOOR ID:
3264873
Thewi_0909
View Structure
14
1004719-1004851
(+)
ydaO-yuaA
1004856-1005780 (+)
Thewi_0966
NLP/P60 protein
Thewi_0966
Single gene
DOOR ID:
3264897
Thewi_0966
View Structure
15
1043196-1043327
(+)
ydaO-yuaA
1043428-1044529 (+)
Thewi_1012
NAD/NADP octopine/nopaline dehydrogenase
Thewi_1012
Operon
DOOR ID:
917646
Thewi_1012,
Thewi_1013
View Structure
16
1142362-1142488
(+)
ydaO-yuaA
1143341-1143902 (-)
Thewi_1114
Thewi_1114
Single gene
DOOR ID:
3264938
Thewi_1114
View Structure
17
1237154-1237236
(+)
c-di-GMP-II
1237262-1238939 (+)
Thewi_1211
Type II secretion system protein E
Thewi_1211
Operon
DOOR ID:
917681
Thewi_1211,
Thewi_1212,
Thewi_1213,
Thewi_1214
View Structure
18
1470658-1470780
(+)
SAM
1470850-1471885 (+)
Thewi_1473
Methionine import ATP-binding protein MetN
Thewi_1473
Operon
DOOR ID:
917723
Thewi_1473,
Thewi_1474,
Thewi_1475,
Thewi_1476
View Structure
19
1769289-1769393
(-)
SAM
1768313-1769225 (-)
Thewi_1766
Methylenetetrahydrofolate reductase (0)
Thewi_1766
Operon
DOOR ID:
917773
Thewi_1764,
Thewi_1765,
Thewi_1766
View Structure
20
1834094-1834314
(-)
cobalamin
1831902-1833981 (-)
Thewi_1825
Anaerobic ribonucleoside-triphosphate reductase
Thewi_1825
Operon
DOOR ID:
917785
Thewi_1824,
Thewi_1825
View Structure
21
1856672-1856731
(-)
fluoride
1854803-1856567 (-)
Thewi_1850
Dynamin family protein
Thewi_1850
Single gene
DOOR ID:
3265120
Thewi_1850
View Structure
22
1941297-1941333
(-)
PreQ1
1939802-1940030 (-)
Thewi_1929
Thewi_1929
Single gene
DOOR ID:
3265146
Thewi_1929
View Structure
23
1968874-1969063
(+)
lysine
1969186-1970524 (+)
Thewi_1954
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
Thewi_1954
Single gene
DOOR ID:
3265148
Thewi_1954
View Structure
24
2084446-2084556
(-)
SAM
2083094-2084378 (-)
Thewi_2051
Homoserine dehydrogenase
Thewi_2051
Operon
DOOR ID:
917823
Thewi_2049,
Thewi_2050,
Thewi_2051
View Structure
25
2088431-2088538
(+)
TPP
2088583-2089882 (+)
Thewi_2055
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Thewi_2055
Single gene
DOOR ID:
3265183
Thewi_2055
View Structure
26
2223064-2223218
(-)
glmS
2221202-2223029 (-)
Thewi_2175
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Thewi_2175
Single gene
DOOR ID:
3265217
Thewi_2175
View Structure
27
2517123-2517196
(-)
fluoride
2515516-2517052 (-)
Thewi_2496
DNA mismatch repair protein MutS domain protein
Thewi_2496
Operon
DOOR ID:
917905
Thewi_2495,
Thewi_2496
View Structure
28
2555150-2555312
(-)
ykoK
2552092-2554780 (-)
Thewi_2526
Magnesium-translocating P-type ATPase
Thewi_2526
Single gene
DOOR ID:
3265293
Thewi_2526
View Structure
29
2557396-2557498
(-)
TPP
2556694-2557333 (-)
Thewi_2528
Proton-coupled thiamine transporter YuaJ
Thewi_2528
Single gene
DOOR ID:
3265295
Thewi_2528
View Structure
Genome:
Thermoanaerobacter wiegelii Rt8.B1
(
NC_015958.1
);
Phylum:
Firmicutes
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carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:27;a:19:{i:0;i:27;i:1;s:11:"NC_015958.1";i:2;s:35:"Thermoanaerobacter wiegelii Rt8.B1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2517123-2517196";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2515516-2517052";i:10;s:1:"-";i:11;s:10:"Thewi_2496";i:12;s:47:"DNA mismatch repair protein MutS domain protein";i:13;s:10:"Thewi_2496";i:14;s:6:"Operon";i:15;s:6:"917905";i:16;s:21:"Thewi_2495;Thewi_2496";i:17;s:28:"mismatch repair [GO:0006298]";i:18;s:15:"View Structure ";}i:28;a:19:{i:0;i:28;i:1;s:11:"NC_015958.1";i:2;s:35:"Thermoanaerobacter wiegelii Rt8.B1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2555150-2555312";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2552092-2554780";i:10;s:1:"-";i:11;s:10:"Thewi_2526";i:12;s:37:"Magnesium-translocating P-type ATPase";i:13;s:10:"Thewi_2526";i:14;s:11:"Single gene";i:15;s:7:"3265293";i:16;s:10:"Thewi_2526";i:17;s:0:"";i:18;s:15:"View Structure ";}i:29;a:19:{i:0;i:29;i:1;s:11:"NC_015958.1";i:2;s:35:"Thermoanaerobacter wiegelii Rt8.B1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2557396-2557498";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2556694-2557333";i:10;s:1:"-";i:11;s:10:"Thewi_2528";i:12;s:40:"Proton-coupled thiamine transporter YuaJ";i:13;s:10:"Thewi_2528";i:14;s:11:"Single gene";i:15;s:7:"3265295";i:16;s:10:"Thewi_2528";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}}