About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
447589-447756
(+)
lysine
447844-449416 (+)
LCGT_0431
LCGT_0431
Operon
DOOR ID:
911308
LCGT_0431,
LCGT_0432
View Structure
2
547052-547157
(+)
preQ1-II
547718-548504 (-)
LCGT_0532
LCGT_0532
Single gene
DOOR ID:
3248224
LCGT_0532
View Structure
3
821054-821210
(+)
yybP-ykoY
821341-824017 (+)
LCGT_0798
LCGT_0798
Single gene
DOOR ID:
3248305
LCGT_0798
View Structure
4
924971-925087
(+)
FMN
925187-925772 (+)
LCGT_0896
LCGT_0896
Single gene
DOOR ID:
3248338
LCGT_0896
View Structure
5
1068600-1068697
(-)
purine
1067847-1068441 (-)
LCGT_1037
LCGT_1037
Operon
DOOR ID:
911447
LCGT_1036,
LCGT_1037
View Structure
6
1728215-1728313
(+)
TPP
1728369-1728906 (+)
LCGT_1749
LCGT_1749
Operon
DOOR ID:
911610
LCGT_1749,
LCGT_1750
View Structure
7
1740264-1740362
(-)
THF
1739680-1740220 (-)
LCGT_1760
LCGT_1760
Single gene
DOOR ID:
3248622
LCGT_1760
View Structure
8
1875038-1875214
(+)
lysine
1875289-1876753 (+)
LCGT_1881
LCGT_1881
Single gene
DOOR ID:
3248670
LCGT_1881
View Structure
Genome:
Lactococcus garvieae ATCC 49156
(
NC_015930.1
);
Phylum:
Firmicutes
a:9:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015930.1";i:2;s:31:"Lactococcus garvieae ATCC 49156";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"447589-447756";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"447844-449416";i:10;s:1:"+";i:11;s:9:"LCGT_0431";i:12;s:0:"";i:13;s:9:"LCGT_0431";i:14;s:6:"Operon";i:15;s:6:"911308";i:16;s:19:"LCGT_0431;LCGT_0432";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015930.1";i:2;s:31:"Lactococcus garvieae ATCC 49156";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"547052-547157";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"547718-548504";i:10;s:1:"-";i:11;s:9:"LCGT_0532";i:12;s:0:"";i:13;s:9:"LCGT_0532";i:14;s:11:"Single gene";i:15;s:7:"3248224";i:16;s:9:"LCGT_0532";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015930.1";i:2;s:31:"Lactococcus garvieae ATCC 49156";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"821054-821210";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"821341-824017";i:10;s:1:"+";i:11;s:9:"LCGT_0798";i:12;s:0:"";i:13;s:9:"LCGT_0798";i:14;s:11:"Single gene";i:15;s:7:"3248305";i:16;s:9:"LCGT_0798";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015930.1";i:2;s:31:"Lactococcus garvieae ATCC 49156";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"924971-925087";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"925187-925772";i:10;s:1:"+";i:11;s:9:"LCGT_0896";i:12;s:0:"";i:13;s:9:"LCGT_0896";i:14;s:11:"Single gene";i:15;s:7:"3248338";i:16;s:9:"LCGT_0896";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015930.1";i:2;s:31:"Lactococcus garvieae ATCC 49156";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1068600-1068697";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1067847-1068441";i:10;s:1:"-";i:11;s:9:"LCGT_1037";i:12;s:0:"";i:13;s:9:"LCGT_1037";i:14;s:6:"Operon";i:15;s:6:"911447";i:16;s:19:"LCGT_1036;LCGT_1037";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015930.1";i:2;s:31:"Lactococcus garvieae ATCC 49156";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1728215-1728313";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1728369-1728906";i:10;s:1:"+";i:11;s:9:"LCGT_1749";i:12;s:0:"";i:13;s:9:"LCGT_1749";i:14;s:6:"Operon";i:15;s:6:"911610";i:16;s:19:"LCGT_1749;LCGT_1750";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015930.1";i:2;s:31:"Lactococcus garvieae ATCC 49156";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1740264-1740362";i:6;s:1:"-";i:7;s:3:"THF";i:8;s:0:"";i:9;s:15:"1739680-1740220";i:10;s:1:"-";i:11;s:9:"LCGT_1760";i:12;s:0:"";i:13;s:9:"LCGT_1760";i:14;s:11:"Single gene";i:15;s:7:"3248622";i:16;s:9:"LCGT_1760";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015930.1";i:2;s:31:"Lactococcus garvieae ATCC 49156";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1875038-1875214";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1875289-1876753";i:10;s:1:"+";i:11;s:9:"LCGT_1881";i:12;s:0:"";i:13;s:9:"LCGT_1881";i:14;s:11:"Single gene";i:15;s:7:"3248670";i:16;s:9:"LCGT_1881";i:17;s:0:"";i:18;s:15:"View Structure ";}}