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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1734690-1734786
(-)
TPP
1732204-1734607 (-)
Cycma_1460
TonB-dependent receptor
Cycma_1460
Single gene
DOOR ID:
3246508
Cycma_1460
View Structure
2
2520581-2520773
(-)
cobalamin
2518076-2520398 (-)
Cycma_2165
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Cycma_2165
Single gene
DOOR ID:
3246764
Cycma_2165
View Structure
3
3588435-3588536
(+)
SAM
3588612-3589656 (+)
Cycma_3064
Homocysteine S-methyltransferase
Cycma_3064
Operon
DOOR ID:
910541
Cycma_3064,
Cycma_3065,
Cycma_3066,
Cycma_3067,
Cycma_3068,
Cycma_3069
View Structure
4
3795312-3795524
(+)
cobalamin
3795712-3797599 (+)
Cycma_3233
TonB-dependent receptor
Cycma_3233
Operon
DOOR ID:
910581
Cycma_3233,
Cycma_3234
View Structure
5
4244292-4244386
(-)
TPP
4243498-4244221 (-)
Cycma_3588
Methyltransferase type 11
Cycma_3588
Operon
DOOR ID:
910656
Cycma_3585,
Cycma_3586,
Cycma_3587,
Cycma_3588
View Structure
6
5250151-5250254
(-)
SAM
5249384-5249909 (-)
Cycma_4322
OsmC family protein
Cycma_4322
Single gene
DOOR ID:
3247486
Cycma_4322
View Structure
7
5841055-5841164
(+)
SAM
5841346-5842651 (+)
Cycma_4797
O-acetylhomoserine/O-acetylserine sulfhydrylase
Cycma_4797
Operon
DOOR ID:
910944
Cycma_4797,
Cycma_4798,
Cycma_4799
View Structure
8
5981844-5981945
(+)
SAM
5982063-5983239 (+)
Cycma_4910
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Cycma_4910
Single gene
DOOR ID:
3247660
Cycma_4910
View Structure
Genome:
Cyclobacterium marinum DSM 745
(
NC_015914.1
);
Phylum:
Bacteroidetes/Chlorobi group
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