About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
81265-81355
(-)
glycine
79679-80957 (-)
glyA2
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
MCAN_00701
Operon
DOOR ID:
904299
MCAN_00691
(sdaA)
,
MCAN_00701
(glyA2)
View Structure
2
316444-316617
(-)
cobalamin
314635-316306 (-)
PPE2
PPE family protein
MCAN_02631
Operon
DOOR ID:
904335
MCAN_02611
(cobU)
,
MCAN_02621
(cobQ1)
,
MCAN_02631
(PPE2)
View Structure
3
511416-511526
(+)
TPP
512535-512742 (+)
thiS
MCAN_04141
Operon
DOOR ID:
904364
MCAN_04131
(thiO)
,
MCAN_04141
(thiS)
,
MCAN_04151
(thiG)
View Structure
4
520534-520644
(-)
TPP
518075-518873 (-)
thiD
Putative phosphomethylpyrimidine kinase THID (HMP-phosphate kinase) (HMP-P kinase)
MCAN_04201
Operon
DOOR ID:
904365
MCAN_04191,
MCAN_04201
(thiD)
,
MCAN_04211
(thiC)
View Structure
5
973339-973561
(-)
ydaO-yuaA
972108-973329 (-)
rpfA
Putative resuscitation-promoting factor RPFA
MCAN_08691
Single gene
DOOR ID:
3236520
MCAN_08691
(rpfA)
View Structure
6
1279188-1279406
(-)
cobalamin
1276775-1279055 (-)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
MCAN_11421
Single gene
DOOR ID:
3236622
MCAN_11421
(metE)
View Structure
7
1767672-1767841
(+)
ykoK
1768138-1768375 (+)
MCAN_15581
MCAN_15581
Single gene
DOOR ID:
3236779
MCAN_15581
View Structure
8
2087725-2087899
(+)
ykoK
2088201-2088501 (+)
PE20
PE family protein
MCAN_18221
Single gene
DOOR ID:
3236875
MCAN_18221
(PE20)
View Structure
9
2114054-2114151
(+)
glycine
2114317-2117143 (+)
gcvB
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
MCAN_18471
Operon
DOOR ID:
904673
MCAN_18451,
MCAN_18461,
MCAN_18471
(gcvB)
View Structure
10
3793671-3793790
(+)
SAM-IV
3793826-3795176 (+)
metC
Putative O-acetylhomoserine sulfhydrylase METC (Homocysteine synthase) (O-acetylhomoserine (Thiol)-lyase) (OAH sulfhydrylase) (O-acetyl-L-homoserine sulfhydrylase)
MCAN_33671
Operon
DOOR ID:
904990
MCAN_33671
(metC)
,
MCAN_33681
(metA)
,
MCAN_33691
View Structure
Genome:
Mycobacterium canettii CIPT 140010059
(
NC_015848.1
);
Phylum:
Actinobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015848.1";i:2;s:38:"Mycobacterium canettii CIPT 140010059 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"81265-81355";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:11:"79679-80957";i:10;s:1:"-";i:11;s:5:"glyA2";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:10:"MCAN_00701";i:14;s:6:"Operon";i:15;s:6:"904299";i:16;s:34:"MCAN_00691(sdaA);MCAN_00701(glyA2)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015848.1";i:2;s:38:"Mycobacterium canettii CIPT 140010059 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"316444-316617";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"314635-316306";i:10;s:1:"-";i:11;s:4:"PPE2";i:12;s:18:"PPE family protein";i:13;s:10:"MCAN_02631";i:14;s:6:"Operon";i:15;s:6:"904335";i:16;s:51:"MCAN_02611(cobU);MCAN_02621(cobQ1);MCAN_02631(PPE2)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015848.1";i:2;s:38:"Mycobacterium canettii CIPT 140010059 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"511416-511526";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"512535-512742";i:10;s:1:"+";i:11;s:4:"thiS";i:12;s:0:"";i:13;s:10:"MCAN_04141";i:14;s:6:"Operon";i:15;s:6:"904364";i:16;s:50:"MCAN_04131(thiO);MCAN_04141(thiS);MCAN_04151(thiG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015848.1";i:2;s:38:"Mycobacterium canettii CIPT 140010059 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"520534-520644";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"518075-518873";i:10;s:1:"-";i:11;s:4:"thiD";i:12;s:82:"Putative phosphomethylpyrimidine kinase THID (HMP-phosphate kinase) (HMP-P kinase)";i:13;s:10:"MCAN_04201";i:14;s:6:"Operon";i:15;s:6:"904365";i:16;s:44:"MCAN_04191;MCAN_04201(thiD);MCAN_04211(thiC)";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015848.1";i:2;s:38:"Mycobacterium canettii CIPT 140010059 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"973339-973561";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"972108-973329";i:10;s:1:"-";i:11;s:4:"rpfA";i:12;s:44:"Putative resuscitation-promoting factor RPFA";i:13;s:10:"MCAN_08691";i:14;s:11:"Single gene";i:15;s:7:"3236520";i:16;s:16:"MCAN_08691(rpfA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015848.1";i:2;s:38:"Mycobacterium canettii CIPT 140010059 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1279188-1279406";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1276775-1279055";i:10;s:1:"-";i:11;s:4:"metE";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:10:"MCAN_11421";i:14;s:11:"Single gene";i:15;s:7:"3236622";i:16;s:16:"MCAN_11421(metE)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015848.1";i:2;s:38:"Mycobacterium canettii CIPT 140010059 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1767672-1767841";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1768138-1768375";i:10;s:1:"+";i:11;s:10:"MCAN_15581";i:12;s:0:"";i:13;s:10:"MCAN_15581";i:14;s:11:"Single gene";i:15;s:7:"3236779";i:16;s:10:"MCAN_15581";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015848.1";i:2;s:38:"Mycobacterium canettii CIPT 140010059 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2087725-2087899";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2088201-2088501";i:10;s:1:"+";i:11;s:4:"PE20";i:12;s:17:"PE family protein";i:13;s:10:"MCAN_18221";i:14;s:11:"Single gene";i:15;s:7:"3236875";i:16;s:16:"MCAN_18221(PE20)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015848.1";i:2;s:38:"Mycobacterium canettii CIPT 140010059 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2114054-2114151";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2114317-2117143";i:10;s:1:"+";i:11;s:4:"gcvB";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:10:"MCAN_18471";i:14;s:6:"Operon";i:15;s:6:"904673";i:16;s:38:"MCAN_18451;MCAN_18461;MCAN_18471(gcvB)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015848.1";i:2;s:38:"Mycobacterium canettii CIPT 140010059 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3793671-3793790";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3793826-3795176";i:10;s:1:"+";i:11;s:4:"metC";i:12;s:163:"Putative O-acetylhomoserine sulfhydrylase METC (Homocysteine synthase) (O-acetylhomoserine (Thiol)-lyase) (OAH sulfhydrylase) (O-acetyl-L-homoserine sulfhydrylase)";i:13;s:10:"MCAN_33671";i:14;s:6:"Operon";i:15;s:6:"904990";i:16;s:44:"MCAN_33671(metC);MCAN_33681(metA);MCAN_33691";i:17;s:50:"cellular amino acid metabolic process [GO:0006520]";i:18;s:15:"View Structure ";}}
