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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
57437-57663
(-)
cobalamin
55493-57368 (-)
btuB
Vitamin B12 TonB-dependent receptor
zobellia_56
Operon
DOOR ID:
902302
zobellia_55,
zobellia_56
(btuB)
View Structure
2
1003409-1003515
(-)
SAM
1002298-1003300 (-)
metH
Methionine synthase; homocysteine-binding module (3)
zobellia_837
Operon
DOOR ID:
902473
zobellia_836
(metH)
,
zobellia_837
(metH)
,
zobellia_838,
zobellia_840
(cobA1)
,
zobellia_841
(sirA)
View Structure
3
1024409-1024523
(-)
SAM
1023010-1024285 (-)
metY
Cys/Met metabolism pyridoxal-phosphate-dependent enzymes (9)
zobellia_855
Operon
DOOR ID:
902478
zobellia_853
(metZ)
,
zobellia_854
(metX)
,
zobellia_855
(metY)
View Structure
4
1590500-1590633
(-)
TPP
1588274-1590407 (-)
zobellia_1340
TonB-dependent Receptor
zobellia_1340
Single gene
DOOR ID:
3233815
zobellia_1340
View Structure
5
4284757-4284853
(+)
TPP
4284963-4285167 (+)
thiS
Sulfur transfer protein ThiS
zobellia_3653
Single gene
DOOR ID:
3234647
zobellia_3653
(thiS)
View Structure
Genome:
Zobellia galactanivorans
(
NC_015844.1
);
Phylum:
Bacteroidetes/Chlorobi group
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