About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
107955-108054
(-)
TPP
106938-107922 (-)
tbpA
Thiamine-binding periplasmic protein
SBG_0094
Operon
DOOR ID:
901548
SBG_0092
(yabJ)
,
SBG_0093
(yabK)
,
SBG_0094
(tbpA)
View Structure
2
370152-370202
(-)
SAH
368317-368593 (+)
SBG_0318
Putative secreted protein
SBG_0318
Single gene
DOOR ID:
3231897
SBG_0318
View Structure
3
757959-758005
(+)
SAM-SAH
758031-759315 (-)
SBG_0671
Putative pectin esterase (1)
SBG_0671
Single gene
DOOR ID:
3232040
SBG_0671
View Structure
4
782737-782882
(+)
MOCO
783880-784393 (+)
moaB
Molybdenum cofactor biosynthesis protein B
SBG_0691
Operon
DOOR ID:
901667
SBG_0690
(moaA)
,
SBG_0691
(moaB)
,
SBG_0692
(moaC)
,
SBG_0693
(moaD)
,
SBG_0694
(moaE)
,
SBG_0695
View Structure
5
1846468-1846569
(+)
yybP-ykoY
1846626-1847247 (+)
SBG_1690
Probable manganese efflux pump MntP
SBG_1690
Single gene
DOOR ID:
3232481
SBG_1690
View Structure
6
2135130-2135227
(-)
TPP
2134300-2135098 (-)
SBG_1960
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
SBG_1960
Operon
DOOR ID:
901891
SBG_1958,
SBG_1959
(thiD)
,
SBG_1960
View Structure
7
3062698-3062895
(-)
FMN
3061938-3062592 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
SBG_2788
Single gene
DOOR ID:
3232854
SBG_2788
(ribB)
View Structure
8
3184276-3184403
(-)
glycine
3182279-3183440 (-)
SBG_2909
Putative amino acid permease
SBG_2909
Single gene
DOOR ID:
3232896
SBG_2909
View Structure
9
3994867-3995063
(+)
cobalamin
3995127-3996972 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
SBG_3620
Operon
DOOR ID:
902228
SBG_3620
(btuB)
,
SBG_3621
(murI)
View Structure
10
4027085-4027178
(-)
TPP
4025104-4027000 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
SBG_3638
Operon
DOOR ID:
902235
SBG_3636
(thiF)
,
SBG_3637
(thiE)
,
SBG_3638
(thiC)
View Structure
11
4230021-4230065
(+)
mini-ykkC
4230086-4230404 (+)
sugE
SBG_3787
Single gene
DOOR ID:
3233243
SBG_3787
(sugE)
View Structure
12
4323998-4324109
(+)
Mg sensor
4324204-4326913 (+)
mgtA
Mg(2+) transport ATPase; P-type
SBG_3879
Single gene
DOOR ID:
3233281
SBG_3879
(mgtA)
View Structure
Genome:
Salmonella bongori NCTC 12419
(
NC_015761.1
);
Phylum:
Gammaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015761.1";i:2;s:29:"Salmonella bongori NCTC 12419";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"107955-108054";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"106938-107922";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:36:"Thiamine-binding periplasmic protein";i:13;s:8:"SBG_0094";i:14;s:6:"Operon";i:15;s:6:"901548";i:16;s:44:"SBG_0092(yabJ);SBG_0093(yabK);SBG_0094(tbpA)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015761.1";i:2;s:29:"Salmonella bongori NCTC 12419";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"370152-370202";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"368317-368593";i:10;s:1:"+";i:11;s:8:"SBG_0318";i:12;s:25:"Putative secreted protein";i:13;s:8:"SBG_0318";i:14;s:11:"Single gene";i:15;s:7:"3231897";i:16;s:8:"SBG_0318";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015761.1";i:2;s:29:"Salmonella bongori NCTC 12419";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"757959-758005";i:6;s:1:"+";i:7;s:7:"SAM-SAH";i:8;s:0:"";i:9;s:13:"758031-759315";i:10;s:1:"-";i:11;s:8:"SBG_0671";i:12;s:28:"Putative pectin esterase (1)";i:13;s:8:"SBG_0671";i:14;s:11:"Single gene";i:15;s:7:"3232040";i:16;s:8:"SBG_0671";i:17;s:35:"cell wall modification [GO:0042545]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015761.1";i:2;s:29:"Salmonella bongori NCTC 12419";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"782737-782882";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"783880-784393";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:8:"SBG_0691";i:14;s:6:"Operon";i:15;s:6:"901667";i:16;s:83:"SBG_0690(moaA);SBG_0691(moaB);SBG_0692(moaC);SBG_0693(moaD);SBG_0694(moaE);SBG_0695";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015761.1";i:2;s:29:"Salmonella bongori NCTC 12419";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1846468-1846569";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1846626-1847247";i:10;s:1:"+";i:11;s:8:"SBG_1690";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:8:"SBG_1690";i:14;s:11:"Single gene";i:15;s:7:"3232481";i:16;s:8:"SBG_1690";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015761.1";i:2;s:29:"Salmonella bongori NCTC 12419";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2135130-2135227";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2134300-2135098";i:10;s:1:"-";i:11;s:8:"SBG_1960";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:8:"SBG_1960";i:14;s:6:"Operon";i:15;s:6:"901891";i:16;s:32:"SBG_1958;SBG_1959(thiD);SBG_1960";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015761.1";i:2;s:29:"Salmonella bongori NCTC 12419";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3062698-3062895";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3061938-3062592";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"SBG_2788";i:14;s:11:"Single gene";i:15;s:7:"3232854";i:16;s:14:"SBG_2788(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015761.1";i:2;s:29:"Salmonella bongori NCTC 12419";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3184276-3184403";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3182279-3183440";i:10;s:1:"-";i:11;s:8:"SBG_2909";i:12;s:28:"Putative amino acid permease";i:13;s:8:"SBG_2909";i:14;s:11:"Single gene";i:15;s:7:"3232896";i:16;s:8:"SBG_2909";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015761.1";i:2;s:29:"Salmonella bongori NCTC 12419";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3994867-3995063";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3995127-3996972";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:8:"SBG_3620";i:14;s:6:"Operon";i:15;s:6:"902228";i:16;s:29:"SBG_3620(btuB);SBG_3621(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015761.1";i:2;s:29:"Salmonella bongori NCTC 12419";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4027085-4027178";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4025104-4027000";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"SBG_3638";i:14;s:6:"Operon";i:15;s:6:"902235";i:16;s:44:"SBG_3636(thiF);SBG_3637(thiE);SBG_3638(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015761.1";i:2;s:29:"Salmonella bongori NCTC 12419";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4230021-4230065";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4230086-4230404";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:8:"SBG_3787";i:14;s:11:"Single gene";i:15;s:7:"3233243";i:16;s:14:"SBG_3787(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015761.1";i:2;s:29:"Salmonella bongori NCTC 12419";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4323998-4324109";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4324204-4326913";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:32:"Mg(2+) transport ATPase; P-type ";i:13;s:8:"SBG_3879";i:14;s:11:"Single gene";i:15;s:7:"3233281";i:16;s:14:"SBG_3879(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}