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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
79292-79382
(-)
glycine
77706-78984 (-)
glyA2
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
MAF_00700
Operon
DOOR ID:
900311
MAF_00690
(sdaA)
,
MAF_00700
(glyA2)
View Structure
2
304463-304636
(-)
cobalamin
302654-304325 (-)
PPE2
PPE family protein
MAF_02570
Operon
DOOR ID:
900347
MAF_02550
(cobU)
,
MAF_02560
(cobQ1)
,
MAF_02570
(PPE2)
View Structure
3
497784-497894
(+)
TPP
498903-499110 (+)
thiS
MAF_04180
Operon
DOOR ID:
900379
MAF_04170
(thiO)
,
MAF_04180
(thiS)
,
MAF_04190
(thiG)
View Structure
4
506953-507063
(-)
TPP
504494-505292 (-)
thiD
Putative phosphomethylpyrimidine kinase THID (HMP-phosphate kinase)
MAF_04240
Operon
DOOR ID:
900380
MAF_04230,
MAF_04240
(thiD)
,
MAF_04250
(thiC)
View Structure
5
961893-962115
(-)
ydaO-yuaA
960659-961883 (-)
rpfA
Putative resuscitation-promoting factor RPFA
MAF_08760
Single gene
DOOR ID:
3229462
MAF_08760
(rpfA)
View Structure
6
1258860-1259078
(-)
cobalamin
1256447-1258727 (-)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
MAF_11490
Single gene
DOOR ID:
3229572
MAF_11490
(metE)
View Structure
7
1739140-1739309
(+)
ykoK
1739606-1739843 (+)
MAF_15620
MAF_15620
Single gene
DOOR ID:
3229723
MAF_15620
View Structure
8
2046904-2047078
(+)
ykoK
2047380-2047680 (+)
PE20
PE family protein
MAF_18280
Single gene
DOOR ID:
3229808
MAF_18280
(PE20)
View Structure
9
2074931-2075028
(+)
glycine
2075194-2078020 (+)
gcvB
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
MAF_18540
Operon
DOOR ID:
900693
MAF_18520,
MAF_18530,
MAF_18540
(gcvB)
View Structure
10
3710598-3710717
(+)
SAM-IV
3710753-3712103 (+)
metC
Putative O-acetylhomoserine sulfhydrylase METC (Homocysteine synthase) (9)
MAF_33560
Operon
DOOR ID:
901021
MAF_33560
(metC)
,
MAF_33570
(metA)
,
MAF_33580
View Structure
Genome:
Mycobacterium africanum GM041182
(
NC_015758.1
);
Phylum:
Actinobacteria
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vitamin-B12 independent isozyme)";i:13;s:9:"MAF_11490";i:14;s:11:"Single gene";i:15;s:7:"3229572";i:16;s:15:"MAF_11490(metE)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015758.1";i:2;s:33:"Mycobacterium africanum GM041182 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1739140-1739309";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1739606-1739843";i:10;s:1:"+";i:11;s:9:"MAF_15620";i:12;s:0:"";i:13;s:9:"MAF_15620";i:14;s:11:"Single gene";i:15;s:7:"3229723";i:16;s:9:"MAF_15620";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015758.1";i:2;s:33:"Mycobacterium africanum GM041182 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2046904-2047078";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2047380-2047680";i:10;s:1:"+";i:11;s:4:"PE20";i:12;s:17:"PE family protein";i:13;s:9:"MAF_18280";i:14;s:11:"Single gene";i:15;s:7:"3229808";i:16;s:15:"MAF_18280(PE20)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015758.1";i:2;s:33:"Mycobacterium africanum GM041182 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2074931-2075028";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2075194-2078020";i:10;s:1:"+";i:11;s:4:"gcvB";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"MAF_18540";i:14;s:6:"Operon";i:15;s:6:"900693";i:16;s:35:"MAF_18520;MAF_18530;MAF_18540(gcvB)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015758.1";i:2;s:33:"Mycobacterium africanum GM041182 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3710598-3710717";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3710753-3712103";i:10;s:1:"+";i:11;s:4:"metC";i:12;s:74:"Putative O-acetylhomoserine sulfhydrylase METC (Homocysteine synthase) (9)";i:13;s:9:"MAF_33560";i:14;s:6:"Operon";i:15;s:6:"901021";i:16;s:41:"MAF_33560(metC);MAF_33570(metA);MAF_33580";i:17;s:0:"";i:18;s:15:"View Structure ";}}
