Genome: Sulfobacillus acidophilus TPY (NC_015757.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 157317-157468 (-)ydaO-yuaA156071-157286 (-)spr

Cell wall lytic activity		TPY_0145Operon

DOOR ID: 899532		TPY_0144,
TPY_0145 (spr)		 View Structure
2 244918-245059 (-)FMN243768-244878 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		TPY_0233Operon

DOOR ID: 899549		TPY_0230 (ribH),
TPY_0231 (ribBA),
TPY_0232 (ribE),
TPY_0233 (ribD)		 View Structure
3 310774-310880 (+)glycine311005-311887 (+)sdaA

L-serine dehydratase; iron-sulfur-dependent; alpha subunit		TPY_0305Operon

DOOR ID: 899564		TPY_0305 (sdaA),
TPY_0306 (sdaA)		 View Structure
4 623941-624039 (+)ykkC-yxkD624384-624711 (+)TPY_0673

TPY_0673Operon

DOOR ID: 899646		TPY_0673,
TPY_0674 (ilvC),
TPY_0675 (leuA),
TPY_0676 (leuB),
TPY_0677 (ilvB),
TPY_0678 (ilvE)		 View Structure
5 764379-764476 (+)SAM764550-765765 (+)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		TPY_0819Single gene

DOOR ID: 3228289		TPY_0819 (metK) View Structure
6 825642-825793 (+)glmS825821-827636 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		TPY_0878Single gene

DOOR ID: 3228306		TPY_0878 (glmS) View Structure
7 1148675-1148801 (+)ydaO-yuaA1148940-1150077 (+)TPY_1227

Glycosyl transferase; group 1 family protein		TPY_1227Operon

DOOR ID: 899762		TPY_1227,
TPY_1228		 View Structure
8 1165559-1165693 (-)ydaO-yuaA1164420-1165548 (-)TPY_1242

Peptidoglycan hydrolase		TPY_1242Single gene

DOOR ID: 3228408		TPY_1242 View Structure
9 1282450-1282635 (+)cobalamin1282763-1283567 (+)cbiX

Sirohydrochlorin cobaltochelatase		TPY_1364Operon

DOOR ID: 899795		TPY_1364 (cbiX),
TPY_1365 (cobA),
TPY_1366 (cbiGH-cobJ)		 View Structure
10 1527286-1527424 (+)ydaO-yuaA1527428-1528160 (+)TPY_1627

3D domain protein		TPY_1627Single gene

DOOR ID: 3228513		TPY_1627 View Structure
11 1797527-1797611 (+)c-di-GMP-I1797697-1799989 (+)TPY_1891

Cellulose-binding family II		TPY_1891single gene

DOOR ID: 3228587		TPY_1891 View Structure
12 2346503-2346667 (+)cobalamin2346772-2347693 (+)TPY_2522

Periplasmic binding protein		TPY_2522Operon

DOOR ID: 900036		TPY_2519 (nanT),
TPY_2520 (acs),
TPY_2521,
TPY_2522,
TPY_2523,
TPY_2524,
TPY_2525		 View Structure
13 2365175-2365273 (+)SAM2366453-2367137 (+)mtnX

2;3-diketo-5-methylthio-1-phosphopentane phosphatase		TPY_2540Operon

DOOR ID: 900041		TPY_2539 (mtnW),
TPY_2540 (mtnX),
TPY_2541 (mtnB)		 View Structure
14 2595494-2595605 (-)glycine2594210-2595296 (-)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)		TPY_2804Operon

DOOR ID: 900100		TPY_2801 (gcvPB),
TPY_2802 (gcvPA),
TPY_2803 (gcvH),
TPY_2804 (gcvT)		 View Structure
15 2667041-2667134 (-)ykkC-yxkD2666244-2666892 (-)TPY_2886

Urea carboxylase-associated protein 2		TPY_2886Operon

DOOR ID: 900119		TPY_2884,
TPY_2885,
TPY_2886		 View Structure
16 2720895-2721000 (-)SAM2719842-2720808 (-)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4)		TPY_2939Operon

DOOR ID: 900133		TPY_2937 (mmuM),
TPY_2938 (metE),
TPY_2939 (metE)		 View Structure
17 2743401-2743533 (+)ydaO-yuaA2743541-2745080 (+)TPY_2962

Peptidoglycan-binding domain 1 protein		TPY_2962Single gene

DOOR ID: 3228898		TPY_2962 View Structure
18 2768083-2768185 (-)SAM2766827-2768018 (-)metZ

Methionine gamma-lyase		TPY_2985Single gene

DOOR ID: 3228910		TPY_2985 (metZ) View Structure
19 2801912-2801999 (-)c-di-GMP-I2801229-2801841 (-)TPY_3016

Uncharacterized protein		TPY_3016operon

DOOR ID: 900146		TPY_3012,
TPY_3013,
TPY_3014,
TPY_3015,
TPY_3016		 View Structure
20 3003227-3003370 (-)ydaO-yuaA3001263-3002970 (-)kdpA

Potassium-transporting ATPase potassium-binding subunit (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) (Potassium-translocating ATPase A chain)		TPY_3245Single gene

DOOR ID: 3228993		TPY_3245 (kdpA) View Structure
21 3012130-3012235 (+)SAM3012306-3013593 (+)metY

O-acetylhomoserine/O-acetylserine sulfhydrylase		TPY_3256Single gene

DOOR ID: 3228998		TPY_3256 (metY) View Structure
22 3015314-3015457 (-)ydaO-yuaA3014006-3015305 (-)TPY_3258

3D domain protein		TPY_3258Single gene

DOOR ID: 3229000		TPY_3258 View Structure
23 3024417-3024517 (-)TPP3023744-3024317 (-)TPY_3265

ABC-type thiamin-related transport system; permease component 1; predicted		TPY_3265Operon

DOOR ID: 900196		TPY_3264 (cbiO),
TPY_3265		 View Structure
24 3362599-3362704 (-)TPP3360779-3362510 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		TPY_3619Operon

DOOR ID: 900253		TPY_3611 (copA),
TPY_3612,
TPY_3613,
TPY_3614 (thiO),
TPY_3615 (moeB),
TPY_3616 (thiG),
TPY_3617,
TPY_3618,
TPY_3619 (thiC)		 View Structure
25 3366037-3366134 (-)TPP3364936-3366001 (-)TPY_3623

Hydrogenase expression/formation protein HypE		TPY_3623Operon

DOOR ID: 900254		TPY_3620 (tenA),
TPY_3621 (thiE),
TPY_3622 (thiD),
TPY_3623		 View Structure
26 3476931-3477010 (+)fluoride3478022-3478655 (+)TPY_3746

TPY_3746Operon

DOOR ID: 900278		TPY_3745,
TPY_3746,
TPY_3747 (hyfF),
TPY_3748,
TPY_3749,
TPY_3750		 View Structure