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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
500322-500425
(+)
TPP
500551-501373 (+)
CXIVA_04730
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
CXIVA_04730
Operon
DOOR ID:
1316661
CXIVA_04730,
CXIVA_04740
View Structure
2
587182-587355
(-)
lysine
586194-587079 (-)
CXIVA_05520
4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase)
CXIVA_05520
Operon
DOOR ID:
1316680
CXIVA_05510,
CXIVA_05520
View Structure
3
892022-892243
(-)
cobalamin
890080-891733 (-)
CXIVA_08370
CXIVA_08370
Operon
DOOR ID:
1316732
CXIVA_08340,
CXIVA_08350,
CXIVA_08360
(XerC)
,
CXIVA_08370
View Structure
4
1305431-1305532
(+)
TPP
1305644-1305941 (+)
CXIVA_12100
CXIVA_12100
Operon
DOOR ID:
1316818
CXIVA_12100,
CXIVA_12110,
CXIVA_12120
View Structure
5
1327817-1328002
(+)
cobalamin
1328355-1329411 (+)
CXIVA_12320
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)
CXIVA_12320
Single gene
DOOR ID:
3224480
CXIVA_12320
View Structure
6
1513760-1513881
(+)
FMN
1514050-1515133 (+)
RibD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
CXIVA_14040
Operon
DOOR ID:
1316853
CXIVA_14040
(RibD)
,
CXIVA_14050,
CXIVA_14060
(RibA)
,
CXIVA_14070
View Structure
7
1588753-1588862
(+)
TPP
1589078-1589963 (+)
CXIVA_14730
CXIVA_14730
Operon
DOOR ID:
1316869
CXIVA_14730,
CXIVA_14740
View Structure
8
1618640-1618715
(-)
c-di-GMP-I
1617383-1618343 (+)
CXIVA_14960
Uncharacterized protein
CXIVA_14960
single gene
DOOR ID:
3224600
CXIVA_14960
View Structure
9
1871820-1871938
(+)
TPP
1872030-1872225 (+)
ThiS
Sulfur transfer protein involved in thiamine biosynthesis
CXIVA_17280
Single gene
DOOR ID:
3224697
CXIVA_17280
(ThiS)
View Structure
Genome:
Clostridium sp. SY8519
(
NC_015737.1
);
Phylum:
Firmicutes
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015737.1";i:2;s:22:"Clostridium sp. SY8519";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"500322-500425";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"500551-501373";i:10;s:1:"+";i:11;s:11:"CXIVA_04730";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:11:"CXIVA_04730";i:14;s:6:"Operon";i:15;s:7:"1316661";i:16;s:23:"CXIVA_04730;CXIVA_04740";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015737.1";i:2;s:22:"Clostridium sp. SY8519";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"587182-587355";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"586194-587079";i:10;s:1:"-";i:11;s:11:"CXIVA_05520";i:12;s:58:"4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) ";i:13;s:11:"CXIVA_05520";i:14;s:6:"Operon";i:15;s:7:"1316680";i:16;s:23:"CXIVA_05510;CXIVA_05520";i:17;s:111:"diaminopimelate biosynthetic process [GO:0019877]; lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015737.1";i:2;s:22:"Clostridium sp. SY8519";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"892022-892243";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"890080-891733";i:10;s:1:"-";i:11;s:11:"CXIVA_08370";i:12;s:0:"";i:13;s:11:"CXIVA_08370";i:14;s:6:"Operon";i:15;s:7:"1316732";i:16;s:53:"CXIVA_08340;CXIVA_08350;CXIVA_08360(XerC);CXIVA_08370";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015737.1";i:2;s:22:"Clostridium sp. SY8519";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1305431-1305532";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1305644-1305941";i:10;s:1:"+";i:11;s:11:"CXIVA_12100";i:12;s:0:"";i:13;s:11:"CXIVA_12100";i:14;s:6:"Operon";i:15;s:7:"1316818";i:16;s:35:"CXIVA_12100;CXIVA_12110;CXIVA_12120";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015737.1";i:2;s:22:"Clostridium sp. SY8519";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1327817-1328002";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1328355-1329411";i:10;s:1:"+";i:11;s:11:"CXIVA_12320";i:12;s:126:"Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)";i:13;s:11:"CXIVA_12320";i:14;s:11:"Single gene";i:15;s:7:"3224480";i:16;s:11:"CXIVA_12320";i:17;s:89:"cobalamin biosynthetic process [GO:0009236]; nucleoside biosynthetic process [GO:0009163]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015737.1";i:2;s:22:"Clostridium sp. SY8519";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1513760-1513881";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1514050-1515133";i:10;s:1:"+";i:11;s:4:"RibD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:11:"CXIVA_14040";i:14;s:6:"Operon";i:15;s:7:"1316853";i:16;s:59:"CXIVA_14040(RibD);CXIVA_14050;CXIVA_14060(RibA);CXIVA_14070";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015737.1";i:2;s:22:"Clostridium sp. SY8519";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1588753-1588862";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1589078-1589963";i:10;s:1:"+";i:11;s:11:"CXIVA_14730";i:12;s:0:"";i:13;s:11:"CXIVA_14730";i:14;s:6:"Operon";i:15;s:7:"1316869";i:16;s:23:"CXIVA_14730;CXIVA_14740";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015737.1";i:2;s:22:"Clostridium sp. SY8519";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1618640-1618715";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1617383-1618343";i:10;s:1:"+";i:11;s:11:"CXIVA_14960";i:12;s:23:"Uncharacterized protein";i:13;s:11:"CXIVA_14960";i:14;s:11:"single gene";i:15;s:7:"3224600";i:16;s:11:"CXIVA_14960";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015737.1";i:2;s:22:"Clostridium sp. SY8519";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1871820-1871938";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1872030-1872225";i:10;s:1:"+";i:11;s:4:"ThiS";i:12;s:57:"Sulfur transfer protein involved in thiamine biosynthesis";i:13;s:11:"CXIVA_17280";i:14;s:11:"Single gene";i:15;s:7:"3224697";i:16;s:17:"CXIVA_17280(ThiS)";i:17;s:0:"";i:18;s:15:"View Structure ";}}