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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
200151-200247
(+)
purine
200417-201590 (+)
LGMK_00975
LGMK_00975
Operon
DOOR ID:
897297
LGMK_00975,
LGMK_00980,
LGMK_00985
(guaA)
View Structure
2
416093-416181
(+)
TPP
416269-417535 (+)
LGMK_01995
LGMK_01995
Operon
DOOR ID:
897340
LGMK_01995,
LGMK_02000
View Structure
3
478554-478601
(-)
PreQ1
477989-478550 (-)
fabG
LGMK_02350
Operon
DOOR ID:
897352
LGMK_02340,
LGMK_02345
(fabG)
,
LGMK_02350
View Structure
4
490900-491049
(-)
FMN
489766-490783 (-)
LGMK_02405
LGMK_02405
Operon
DOOR ID:
897356
LGMK_02390,
LGMK_02395,
LGMK_02400,
LGMK_02405
View Structure
5
542796-542840
(-)
PreQ1
541779-542715 (-)
LGMK_02630
LGMK_02630
Operon
DOOR ID:
897367
LGMK_02625,
LGMK_02630
View Structure
6
552289-552424
(-)
FMN
551634-552222 (-)
LGMK_02685
LGMK_02685
Single gene
DOOR ID:
3223485
LGMK_02685
View Structure
7
642988-643082
(-)
purine
641484-642933 (-)
LGMK_03165
LGMK_03165
Single gene
DOOR ID:
3223512
LGMK_03165
View Structure
8
670569-670746
(-)
lysine
669182-670484 (-)
LGMK_03270
LGMK_03270
Operon
DOOR ID:
897397
LGMK_03250,
LGMK_03255,
LGMK_03260,
LGMK_03265,
LGMK_03270
View Structure
9
680699-680806
(-)
TPP
680144-680588 (-)
LGMK_03330
LGMK_03330
Operon
DOOR ID:
897399
LGMK_03320,
LGMK_03325,
LGMK_03330
View Structure
10
927212-927314
(-)
SAM
925958-927116 (-)
LGMK_04490
LGMK_04490
Operon
DOOR ID:
897454
LGMK_04485,
LGMK_04490
View Structure
11
947448-947537
(+)
TPP
947685-948267 (+)
LGMK_04595
LGMK_04595
Operon
DOOR ID:
897459
LGMK_04595,
LGMK_04600,
LGMK_04605,
LGMK_04610
View Structure
12
1475003-1475091
(-)
TPP
1474371-1474875 (-)
LGMK_07335
LGMK_07335
Single gene
DOOR ID:
3223714
LGMK_07335
View Structure
13
1560680-1560848
(-)
lysine
1559158-1560598 (-)
LGMK_07735
LGMK_07735
Single gene
DOOR ID:
3223738
LGMK_07735
View Structure
14
1659307-1659476
(-)
lysine
1658116-1659229 (-)
LGMK_08205
LGMK_08205
Operon
DOOR ID:
897615
LGMK_08195,
LGMK_08200,
LGMK_08205,
LGMK_08210,
LGMK_08215,
LGMK_08220
View Structure
15
1680553-1680686
(-)
THF
1679928-1680510 (-)
LGMK_08315
LGMK_08315
Single gene
DOOR ID:
3223788
LGMK_08315
View Structure
16
1690493-1690590
(-)
TPP
1689762-1690398 (-)
thiE
LGMK_08365
Operon
DOOR ID:
897617
LGMK_08340,
LGMK_08345,
LGMK_08350
(thiG)
,
LGMK_08355,
LGMK_08360,
LGMK_08365
(thiE)
View Structure
Genome:
Leuconostoc sp. C2
(
NC_015734.1
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015734.1";i:2;s:19:"Leuconostoc sp. C2 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"200151-200247";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"200417-201590";i:10;s:1:"+";i:11;s:10:"LGMK_00975";i:12;s:0:"";i:13;s:10:"LGMK_00975";i:14;s:6:"Operon";i:15;s:6:"897297";i:16;s:38:"LGMK_00975;LGMK_00980;LGMK_00985(guaA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015734.1";i:2;s:19:"Leuconostoc sp. C2 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"416093-416181";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"416269-417535";i:10;s:1:"+";i:11;s:10:"LGMK_01995";i:12;s:0:"";i:13;s:10:"LGMK_01995";i:14;s:6:"Operon";i:15;s:6:"897340";i:16;s:21:"LGMK_01995;LGMK_02000";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015734.1";i:2;s:19:"Leuconostoc sp. C2 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"478554-478601";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"477989-478550";i:10;s:1:"-";i:11;s:4:"fabG";i:12;s:0:"";i:13;s:10:"LGMK_02350";i:14;s:6:"Operon";i:15;s:6:"897352";i:16;s:38:"LGMK_02340;LGMK_02345(fabG);LGMK_02350";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015734.1";i:2;s:19:"Leuconostoc sp. C2 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"490900-491049";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"489766-490783";i:10;s:1:"-";i:11;s:10:"LGMK_02405";i:12;s:0:"";i:13;s:10:"LGMK_02405";i:14;s:6:"Operon";i:15;s:6:"897356";i:16;s:43:"LGMK_02390;LGMK_02395;LGMK_02400;LGMK_02405";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015734.1";i:2;s:19:"Leuconostoc sp. C2 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"542796-542840";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"541779-542715";i:10;s:1:"-";i:11;s:10:"LGMK_02630";i:12;s:0:"";i:13;s:10:"LGMK_02630";i:14;s:6:"Operon";i:15;s:6:"897367";i:16;s:21:"LGMK_02625;LGMK_02630";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015734.1";i:2;s:19:"Leuconostoc sp. 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C2 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"927212-927314";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"925958-927116";i:10;s:1:"-";i:11;s:10:"LGMK_04490";i:12;s:0:"";i:13;s:10:"LGMK_04490";i:14;s:6:"Operon";i:15;s:6:"897454";i:16;s:21:"LGMK_04485;LGMK_04490";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015734.1";i:2;s:19:"Leuconostoc sp. C2 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"947448-947537";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"947685-948267";i:10;s:1:"+";i:11;s:10:"LGMK_04595";i:12;s:0:"";i:13;s:10:"LGMK_04595";i:14;s:6:"Operon";i:15;s:6:"897459";i:16;s:43:"LGMK_04595;LGMK_04600;LGMK_04605;LGMK_04610";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015734.1";i:2;s:19:"Leuconostoc sp. C2 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1475003-1475091";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1474371-1474875";i:10;s:1:"-";i:11;s:10:"LGMK_07335";i:12;s:0:"";i:13;s:10:"LGMK_07335";i:14;s:11:"Single gene";i:15;s:7:"3223714";i:16;s:10:"LGMK_07335";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_015734.1";i:2;s:19:"Leuconostoc sp. C2 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1560680-1560848";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1559158-1560598";i:10;s:1:"-";i:11;s:10:"LGMK_07735";i:12;s:0:"";i:13;s:10:"LGMK_07735";i:14;s:11:"Single gene";i:15;s:7:"3223738";i:16;s:10:"LGMK_07735";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_015734.1";i:2;s:19:"Leuconostoc sp. C2 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1659307-1659476";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1658116-1659229";i:10;s:1:"-";i:11;s:10:"LGMK_08205";i:12;s:0:"";i:13;s:10:"LGMK_08205";i:14;s:6:"Operon";i:15;s:6:"897615";i:16;s:65:"LGMK_08195;LGMK_08200;LGMK_08205;LGMK_08210;LGMK_08215;LGMK_08220";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_015734.1";i:2;s:19:"Leuconostoc sp. C2 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1680553-1680686";i:6;s:1:"-";i:7;s:3:"THF";i:8;s:0:"";i:9;s:15:"1679928-1680510";i:10;s:1:"-";i:11;s:10:"LGMK_08315";i:12;s:0:"";i:13;s:10:"LGMK_08315";i:14;s:11:"Single gene";i:15;s:7:"3223788";i:16;s:10:"LGMK_08315";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_015734.1";i:2;s:19:"Leuconostoc sp. C2 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1690493-1690590";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1689762-1690398";i:10;s:1:"-";i:11;s:4:"thiE";i:12;s:0:"";i:13;s:10:"LGMK_08365";i:14;s:6:"Operon";i:15;s:6:"897617";i:16;s:77:"LGMK_08340;LGMK_08345;LGMK_08350(thiG);LGMK_08355;LGMK_08360;LGMK_08365(thiE)";i:17;s:0:"";i:18;s:15:"View Structure ";}}