Genome: Pseudomonas putida S16 (NC_015733.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 353894-353986 (-)ZMP-ZTP351225-353178 (+)PPS_0305

Iron-sulfur cluster-binding protein		PPS_0305Operon

DOOR ID: 896271		PPS_0305,
PPS_0306,
PPS_0307		 View Structure
2 600987-601128 (-)FMN600255-600906 (-)PPS_0525

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)		PPS_0525Single gene

DOOR ID: 3221310		PPS_0525 View Structure
3 920149-920288 (-)yybP-ykoY919475-920060 (-)PPS_0817

PPS_0817Single gene

DOOR ID: 3221446		PPS_0817 View Structure
4 1453109-1453329 (+)cobalamin1453448-1454060 (+)PPS_1323

Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)		PPS_1323Operon

DOOR ID: 896485		PPS_1323,
PPS_1324,
PPS_1325,
PPS_1326,
PPS_1327,
PPS_1328,
PPS_1329,
PPS_1330,
PPS_1331,
PPS_1332		 View Structure
5 1481659-1481710 (-)mini-ykkC1481315-1481633 (-)PPS_1348

PPS_1348Single gene

DOOR ID: 3221622		PPS_1348 View Structure
6 2247854-2248052 (-)cobalamin2246732-2247743 (-)PPS_2008

Periplasmic binding protein		PPS_2008Operon

DOOR ID: 896613		PPS_2005,
PPS_2006,
PPS_2007,
PPS_2008		 View Structure
7 2251686-2251894 (-)cobalamin2249450-2251577 (-)PPS_2010

TonB-dependent siderophore receptor		PPS_2010Single gene

DOOR ID: 3221928		PPS_2010 View Structure
8 2869148-2869360 (+)cobalamin2869459-2870527 (+)PPS_2575

Cobalamin biosynthesis protein CobW		PPS_2575Operon

DOOR ID: 896723		PPS_2575,
PPS_2576,
PPS_2577		 View Structure
9 3037288-3037402 (-)TPP3036559-3037255 (-)PPS_2742

Aminopyrimidine aminohydrolase 		PPS_2742Operon

DOOR ID: 896754		PPS_2741,
PPS_2742		 View Structure
10 3204270-3204493 (+)cobalamin3204585-3204774 (+)PPS_2880

Cobalt transporter; CbtB subunit		PPS_2880Operon

DOOR ID: 896780		PPS_2880,
PPS_2881,
PPS_2882,
PPS_2883,
PPS_2884		 View Structure
11 5389057-5389163 (-)TPP5387022-5388906 (-)PPS_4765

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		PPS_4765Single gene

DOOR ID: 3223116		PPS_4765 View Structure
12 5462346-5462442 (+)SAH5462462-5463872 (+)PPS_4820

Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)		PPS_4820Single gene

DOOR ID: 3223143		PPS_4820 View Structure