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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
223565-223666
(+)
TPP
223767-225648 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
CNE_1c02220
Single gene
DOOR ID:
3215755
CNE_1c02220
(thiC)
View Structure
2
232133-232248
(+)
SAH
232370-233789 (+)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
CNE_1c02330
Operon
DOOR ID:
893457
CNE_1c02330
(ahcY)
,
CNE_1c02340,
CNE_1c02350
(metF)
,
CNE_1c02360
View Structure
3
977069-977229
(-)
yybP-ykoY
976378-977011 (-)
CNE_1c09540
Hypothetical membrane protein
CNE_1c09540
Single gene
DOOR ID:
3216029
CNE_1c09540
View Structure
4
1629537-1629594
(-)
SAH
1625153-1626152 (-)
cph
Phytochrome-like protein Cph
CNE_1c16020
Single gene
DOOR ID:
3216241
CNE_1c16020
(cph)
View Structure
5
2685806-2685927
(+)
yybP-ykoY
2686049-2686751 (+)
terC
Membrane protein TerC
CNE_1c26000
Operon
DOOR ID:
893950
CNE_1c26000
(terC)
,
CNE_1c26010
(thyA)
,
CNE_1c26020
(folA)
View Structure
6
2838197-2838342
(+)
ZMP-ZTP
2838469-2839717 (+)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
CNE_1c27380
Single gene
DOOR ID:
3216649
CNE_1c27380
(glyA)
View Structure
7
3040212-3040530
(-)
cobalamin
3038221-3040138 (-)
btuB
Vitamin B12 transporter BtuB
CNE_1c29220
Operon
DOOR ID:
894018
CNE_1c29160
(cobC2)
,
CNE_1c29170
(cobS)
,
CNE_1c29180
(cobT)
,
CNE_1c29190
(cobO1)
,
CNE_1c29200
(btuD)
,
CNE_1c29210
(btuC)
,
CNE_1c29220
(btuB)
View Structure
8
3709008-3709095
(+)
glycine
3709340-3710468 (+)
gcvT2
Aminomethyltransferase (0) (Glycine cleavage system T protein)
CNE_1c35700
Operon
DOOR ID:
894155
CNE_1c35700
(gcvT2)
,
CNE_1c35710
(gcvH)
,
CNE_1c35720
(gcvP)
View Structure
9
3709117-3709242
(+)
glycine
3709340-3710468 (+)
gcvT2
Aminomethyltransferase (0) (Glycine cleavage system T protein)
CNE_1c35700
Operon
DOOR ID:
894155
CNE_1c35700
(gcvT2)
,
CNE_1c35710
(gcvH)
,
CNE_1c35720
(gcvP)
View Structure
Genome:
Cupriavidus necator N-1 chromosome I
(
NC_015726.1
);
Phylum:
Betaproteobacteria
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015726.1";i:2;s:36:"Cupriavidus necator N-1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"223565-223666";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"223767-225648";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"CNE_1c02220";i:14;s:11:"Single gene";i:15;s:7:"3215755";i:16;s:17:"CNE_1c02220(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015726.1";i:2;s:36:"Cupriavidus necator N-1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"232133-232248";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"232370-233789";i:10;s:1:"+";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:11:"CNE_1c02330";i:14;s:6:"Operon";i:15;s:6:"893457";i:16;s:59:"CNE_1c02330(ahcY);CNE_1c02340;CNE_1c02350(metF);CNE_1c02360";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015726.1";i:2;s:36:"Cupriavidus necator N-1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"977069-977229";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"976378-977011";i:10;s:1:"-";i:11;s:11:"CNE_1c09540";i:12;s:29:"Hypothetical membrane protein";i:13;s:11:"CNE_1c09540";i:14;s:11:"Single gene";i:15;s:7:"3216029";i:16;s:11:"CNE_1c09540";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015726.1";i:2;s:36:"Cupriavidus necator N-1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1629537-1629594";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1625153-1626152";i:10;s:1:"-";i:11;s:3:"cph";i:12;s:28:"Phytochrome-like protein Cph";i:13;s:11:"CNE_1c16020";i:14;s:11:"Single gene";i:15;s:7:"3216241";i:16;s:16:"CNE_1c16020(cph)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015726.1";i:2;s:36:"Cupriavidus necator N-1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2685806-2685927";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2686049-2686751";i:10;s:1:"+";i:11;s:4:"terC";i:12;s:21:"Membrane protein TerC";i:13;s:11:"CNE_1c26000";i:14;s:6:"Operon";i:15;s:6:"893950";i:16;s:53:"CNE_1c26000(terC);CNE_1c26010(thyA);CNE_1c26020(folA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015726.1";i:2;s:36:"Cupriavidus necator N-1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2838197-2838342";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2838469-2839717";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:11:"CNE_1c27380";i:14;s:11:"Single gene";i:15;s:7:"3216649";i:16;s:17:"CNE_1c27380(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015726.1";i:2;s:36:"Cupriavidus necator N-1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3040212-3040530";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3038221-3040138";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:28:"Vitamin B12 transporter BtuB";i:13;s:11:"CNE_1c29220";i:14;s:6:"Operon";i:15;s:6:"894018";i:16;s:127:"CNE_1c29160(cobC2);CNE_1c29170(cobS);CNE_1c29180(cobT);CNE_1c29190(cobO1);CNE_1c29200(btuD);CNE_1c29210(btuC);CNE_1c29220(btuB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015726.1";i:2;s:36:"Cupriavidus necator N-1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3709008-3709095";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3709340-3710468";i:10;s:1:"+";i:11;s:5:"gcvT2";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:11:"CNE_1c35700";i:14;s:6:"Operon";i:15;s:6:"894155";i:16;s:54:"CNE_1c35700(gcvT2);CNE_1c35710(gcvH);CNE_1c35720(gcvP)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015726.1";i:2;s:36:"Cupriavidus necator N-1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3709117-3709242";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3709340-3710468";i:10;s:1:"+";i:11;s:5:"gcvT2";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:11:"CNE_1c35700";i:14;s:6:"Operon";i:15;s:6:"894155";i:16;s:54:"CNE_1c35700(gcvT2);CNE_1c35710(gcvH);CNE_1c35720(gcvP)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}}
