RiboswitchDB

Genome: Runella slithyformis DSM 19594 (NC_015703.1); Phylum: Bacteroidetes/Chlorobi group

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

1616108-1616205 (-)

TPP

1613652-1616094 (-)

Runsl_1421

TonB-dependent receptor

Single gene

DOOR ID: 3204622

Runsl_1421

2

2361443-2361725 (-)

cobalamin

2360802-2361393 (-)

Runsl_2054

Operon

DOOR ID: 887958

Runsl_2053,
Runsl_2054

3

3791462-3791554 (-)

TPP

3790700-3791399 (-)

Runsl_3249

Methyltransferase type 11

Single gene

DOOR ID: 3205430

Runsl_3249

4

5386179-5386385 (+)

cobalamin

5386453-5388412 (+)

Runsl_4670

TonB-dependent receptor

Operon

DOOR ID: 888441

Runsl_4670,
Runsl_4671

5

6177225-6177350 (-)

SAM

6176037-6177072 (-)

Runsl_5310

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)

Single gene

DOOR ID: 3206382

Runsl_5310

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";}}