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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
299570-299682
(-)
SMK_box
295642-298063 (-)
leuS
Leucine--tRNA ligase (Leucyl-tRNA synthetase) (LeuRS)
HMPREF0538_20309
Single gene
DOOR ID:
3202448
HMPREF0538_20309
(leuS)
View Structure
2
600605-600779
(-)
lysine
599001-600477 (-)
lysP
Lysine-specific permease
HMPREF0538_20614
Single gene
DOOR ID:
3202532
HMPREF0538_20614
(lysP)
View Structure
3
727214-727320
(+)
TPP
727353-728565 (+)
HMPREF0538_20741
Putative hydroxymethylpyrimidine transporter CytX
HMPREF0538_20741
Single gene
DOOR ID:
3202598
HMPREF0538_20741
View Structure
4
827058-827147
(+)
TPP
827214-827775 (+)
HMPREF0538_20836
HMPREF0538_20836
Operon
DOOR ID:
886603
HMPREF0538_20836,
HMPREF0538_20837,
HMPREF0538_20838
View Structure
5
1010780-1010878
(+)
purine
1010981-1012310 (+)
HMPREF0538_21033
Xanthine permease
HMPREF0538_21033
Single gene
DOOR ID:
3202689
HMPREF0538_21033
View Structure
6
1078928-1079026
(+)
THF
1079379-1079505 (+)
HMPREF0538_21100
HMPREF0538_21100
Single gene
DOOR ID:
3202728
HMPREF0538_21100
View Structure
7
1890289-1890467
(+)
lysine
1890543-1891869 (+)
lysA
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
HMPREF0538_21855
Operon
DOOR ID:
886829
HMPREF0538_21855
(lysA)
,
HMPREF0538_21856
(dapD)
,
HMPREF0538_21857,
HMPREF0538_21858
(dapA)
,
HMPREF0538_21859
(dapB)
,
HMPREF0538_21860
(araT4)
,
HMPREF0538_21861
(asd)
View Structure
8
2050236-2050355
(+)
FMN
2050433-2051051 (+)
HMPREF0538_22012
Riboflavin transporter
HMPREF0538_22012
Single gene
DOOR ID:
3203025
HMPREF0538_22012
View Structure
Genome:
Lactobacillus reuteri SD2112
(
NC_015697.1
);
Phylum:
Firmicutes
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