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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
329930-330036
(+)
preQ1-II
330628-332587 (+)
ligA
DNA ligase (Polydeoxyribonucleotide synthase [NAD(+)])
HMPREF0833_10320
Operon
DOOR ID:
881121
HMPREF0833_10320
(ligA)
,
HMPREF0833_10321,
HMPREF0833_10322
(pulA)
View Structure
2
492177-492272
(+)
purine
492363-492945 (+)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
HMPREF0833_10483
Operon
DOOR ID:
881156
HMPREF0833_10483
(xpt)
,
HMPREF0833_10484
(pbuX)
,
HMPREF0833_10485
(norM)
View Structure
3
1007305-1007462
(-)
ykoK
1004436-1007097 (-)
mgtB
Magnesium-importing ATPase
HMPREF0833_10970
Single gene
DOOR ID:
3192670
HMPREF0833_10970
(mgtB)
View Structure
4
1060710-1060944
(-)
FMN
1059940-1060492 (-)
HMPREF0833_11021
Riboflavin transporter
HMPREF0833_11021
Operon
DOOR ID:
881280
HMPREF0833_11020,
HMPREF0833_11021
View Structure
5
1265767-1265861
(-)
glycine
1264333-1265665 (-)
agcS
Amino acid carrier protein
HMPREF0833_11214
Single gene
DOOR ID:
3192741
HMPREF0833_11214
(agcS)
View Structure
6
1554379-1554480
(-)
TPP
1553545-1554304 (-)
HMPREF0833_11443
ABC transporter; permease protein
HMPREF0833_11443
Operon
DOOR ID:
881379
HMPREF0833_11441
(cysA)
,
HMPREF0833_11442,
HMPREF0833_11443
View Structure
Genome:
Streptococcus parasanguinis ATCC 15912
(
NC_015678.1
);
Phylum:
Firmicutes
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