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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
418356-418558
(+)
cobalamin
418671-419919 (+)
Mesop_0381
Rieske (2Fe-2S) iron-sulfur domain protein
Mesop_0381
Operon
DOOR ID:
878591
Mesop_0381,
Mesop_0382
View Structure
2
645411-645460
(-)
mini-ykkC
645030-645345 (-)
Mesop_0602
Mesop_0602
Single gene
DOOR ID:
3188072
Mesop_0602
View Structure
3
1387003-1387117
(+)
TPP
1387160-1388159 (+)
Mesop_1339
ABC transporter; periplasmic binding protein; thiB subfamily
Mesop_1339
Single gene
DOOR ID:
3188424
Mesop_1339
View Structure
4
1635940-1636017
(-)
sam-alpha
1634649-1635819 (-)
Mesop_1582
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Mesop_1582
Operon
DOOR ID:
878825
Mesop_1581,
Mesop_1582
View Structure
5
3468786-3468899
(+)
TPP
3469538-3470360 (+)
Mesop_3381
Binding-protein-dependent transport systems inner membrane component
Mesop_3381
Operon
DOOR ID:
879160
Mesop_3380,
Mesop_3381,
Mesop_3382
View Structure
6
3791278-3791483
(-)
cobalamin
3790811-3791240 (-)
Mesop_3678
Mesop_3678
Operon
DOOR ID:
879220
Mesop_3672,
Mesop_3673,
Mesop_3674,
Mesop_3675,
Mesop_3676,
Mesop_3677,
Mesop_3678
View Structure
7
3898037-3898235
(+)
cobalamin
3898270-3898450 (+)
Mesop_3804
Cobalt transporter; subunit CbtB
Mesop_3804
Operon
DOOR ID:
879238
Mesop_3804,
Mesop_3805,
Mesop_3806,
Mesop_3807
View Structure
8
4187787-4187873
(-)
glycine
4186536-4187637 (-)
Mesop_4075
Glycine cleavage system T protein
Mesop_4075
Operon
DOOR ID:
879295
Mesop_4073,
Mesop_4074,
Mesop_4075
View Structure
9
5202925-5203135
(-)
cobalamin
5202441-5202903 (-)
Mesop_5085
Mesop_5085
Operon
DOOR ID:
879481
Mesop_5082,
Mesop_5083,
Mesop_5084,
Mesop_5085
View Structure
10
5760097-5760277
(+)
cobalamin
5760279-5761218 (+)
Mesop_5628
Cob(II)yrinic acid a;c-diamide reductase
Mesop_5628
Single gene
DOOR ID:
3190221
Mesop_5628
View Structure
11
5920930-5921076
(+)
FMN
5921152-5921626 (+)
Mesop_5780
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
Mesop_5780
Single gene
DOOR ID:
3190283
Mesop_5780
View Structure
12
6669321-6669414
(-)
glycine
6667654-6668098 (+)
Mesop_6476
GCN5-related N-acetyltransferase
Mesop_6476
Single gene
DOOR ID:
3190533
Mesop_6476
View Structure
13
6820204-6820281
(+)
sam-alpha
6820336-6821527 (+)
Mesop_6629
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Mesop_6629
Single gene
DOOR ID:
3190596
Mesop_6629
View Structure
Genome:
Mesorhizobium opportunistum WSM2075
(
NC_015675.1
);
Phylum:
Alphaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015675.1";i:2;s:36:"Mesorhizobium opportunistum WSM2075 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"418356-418558";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"418671-419919";i:10;s:1:"+";i:11;s:10:"Mesop_0381";i:12;s:42:"Rieske (2Fe-2S) iron-sulfur domain protein";i:13;s:10:"Mesop_0381";i:14;s:6:"Operon";i:15;s:6:"878591";i:16;s:21:"Mesop_0381;Mesop_0382";i:17;s:39:"cellular metabolic process [GO:0044237]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015675.1";i:2;s:36:"Mesorhizobium opportunistum WSM2075 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"645411-645460";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"645030-645345";i:10;s:1:"-";i:11;s:10:"Mesop_0602";i:12;s:0:"";i:13;s:10:"Mesop_0602";i:14;s:11:"Single gene";i:15;s:7:"3188072";i:16;s:10:"Mesop_0602";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015675.1";i:2;s:36:"Mesorhizobium opportunistum WSM2075 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1387003-1387117";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1387160-1388159";i:10;s:1:"+";i:11;s:10:"Mesop_1339";i:12;s:60:"ABC transporter; periplasmic binding protein; thiB subfamily";i:13;s:10:"Mesop_1339";i:14;s:11:"Single gene";i:15;s:7:"3188424";i:16;s:10:"Mesop_1339";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015675.1";i:2;s:36:"Mesorhizobium opportunistum WSM2075 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1635940-1636017";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"1634649-1635819";i:10;s:1:"-";i:11;s:10:"Mesop_1582";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:10:"Mesop_1582";i:14;s:6:"Operon";i:15;s:6:"878825";i:16;s:21:"Mesop_1581;Mesop_1582";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015675.1";i:2;s:36:"Mesorhizobium opportunistum WSM2075 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3468786-3468899";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3469538-3470360";i:10;s:1:"+";i:11;s:10:"Mesop_3381";i:12;s:68:"Binding-protein-dependent transport systems inner membrane component";i:13;s:10:"Mesop_3381";i:14;s:6:"Operon";i:15;s:6:"879160";i:16;s:32:"Mesop_3380;Mesop_3381;Mesop_3382";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015675.1";i:2;s:36:"Mesorhizobium opportunistum WSM2075 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3791278-3791483";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3790811-3791240";i:10;s:1:"-";i:11;s:10:"Mesop_3678";i:12;s:0:"";i:13;s:10:"Mesop_3678";i:14;s:6:"Operon";i:15;s:6:"879220";i:16;s:76:"Mesop_3672;Mesop_3673;Mesop_3674;Mesop_3675;Mesop_3676;Mesop_3677;Mesop_3678";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015675.1";i:2;s:36:"Mesorhizobium opportunistum WSM2075 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3898037-3898235";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3898270-3898450";i:10;s:1:"+";i:11;s:10:"Mesop_3804";i:12;s:32:"Cobalt transporter; subunit CbtB";i:13;s:10:"Mesop_3804";i:14;s:6:"Operon";i:15;s:6:"879238";i:16;s:43:"Mesop_3804;Mesop_3805;Mesop_3806;Mesop_3807";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015675.1";i:2;s:36:"Mesorhizobium opportunistum WSM2075 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4187787-4187873";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"4186536-4187637";i:10;s:1:"-";i:11;s:10:"Mesop_4075";i:12;s:33:"Glycine cleavage system T protein";i:13;s:10:"Mesop_4075";i:14;s:6:"Operon";i:15;s:6:"879295";i:16;s:32:"Mesop_4073;Mesop_4074;Mesop_4075";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015675.1";i:2;s:36:"Mesorhizobium opportunistum WSM2075 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"5202925-5203135";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5202441-5202903";i:10;s:1:"-";i:11;s:10:"Mesop_5085";i:12;s:0:"";i:13;s:10:"Mesop_5085";i:14;s:6:"Operon";i:15;s:6:"879481";i:16;s:43:"Mesop_5082;Mesop_5083;Mesop_5084;Mesop_5085";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015675.1";i:2;s:36:"Mesorhizobium opportunistum WSM2075 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"5760097-5760277";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5760279-5761218";i:10;s:1:"+";i:11;s:10:"Mesop_5628";i:12;s:40:"Cob(II)yrinic acid a;c-diamide reductase";i:13;s:10:"Mesop_5628";i:14;s:11:"Single gene";i:15;s:7:"3190221";i:16;s:10:"Mesop_5628";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015675.1";i:2;s:36:"Mesorhizobium opportunistum WSM2075 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"5920930-5921076";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"5921152-5921626";i:10;s:1:"+";i:11;s:10:"Mesop_5780";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:10:"Mesop_5780";i:14;s:11:"Single gene";i:15;s:7:"3190283";i:16;s:10:"Mesop_5780";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015675.1";i:2;s:36:"Mesorhizobium opportunistum WSM2075 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"6669321-6669414";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"6667654-6668098";i:10;s:1:"+";i:11;s:10:"Mesop_6476";i:12;s:32:"GCN5-related N-acetyltransferase";i:13;s:10:"Mesop_6476";i:14;s:11:"Single gene";i:15;s:7:"3190533";i:16;s:10:"Mesop_6476";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_015675.1";i:2;s:36:"Mesorhizobium opportunistum WSM2075 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"6820204-6820281";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"6820336-6821527";i:10;s:1:"+";i:11;s:10:"Mesop_6629";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:10:"Mesop_6629";i:14;s:11:"Single gene";i:15;s:7:"3190596";i:16;s:10:"Mesop_6629";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}}