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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
35325-35416
(+)
TPP
35487-36753 (+)
Flexsi_0034
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Flexsi_0034
Operon
DOOR ID:
877201
Flexsi_0034,
Flexsi_0035,
Flexsi_0036
View Structure
2
193142-193358
(+)
cobalamin
193776-195669 (+)
Flexsi_0181
TonB-dependent receptor plug
Flexsi_0181
Operon
DOOR ID:
877226
Flexsi_0181,
Flexsi_0182
View Structure
3
820487-820769
(-)
cobalamin
818182-820231 (-)
Flexsi_0777
Anaerobic ribonucleoside-triphosphate reductase
Flexsi_0777
Single gene
DOOR ID:
3186265
Flexsi_0777
View Structure
4
2262902-2263009
(+)
SAM
2263077-2264190 (+)
Flexsi_2112
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Flexsi_2112
Operon
DOOR ID:
877602
Flexsi_2112,
Flexsi_2113,
Flexsi_2114,
Flexsi_2115,
Flexsi_2116
View Structure
5
2397199-2397339
(+)
MOCO
2397405-2398437 (+)
Flexsi_2236
Molybdopterin binding domain protein
Flexsi_2236
Operon
DOOR ID:
877624
Flexsi_2236,
Flexsi_2237,
Flexsi_2238,
Flexsi_2239,
Flexsi_2240,
Flexsi_2241
View Structure
Genome:
Flexistipes sinusarabici DSM 4947
(
NC_015672.1
);
Phylum:
Deferribacteres
a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015672.1";i:2;s:34:"Flexistipes sinusarabici DSM 4947 ";i:3;s:15:"Deferribacteres";i:4;s:5:"68337";i:5;s:11:"35325-35416";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"35487-36753";i:10;s:1:"+";i:11;s:11:"Flexsi_0034";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"Flexsi_0034";i:14;s:6:"Operon";i:15;s:6:"877201";i:16;s:35:"Flexsi_0034;Flexsi_0035;Flexsi_0036";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015672.1";i:2;s:34:"Flexistipes sinusarabici DSM 4947 ";i:3;s:15:"Deferribacteres";i:4;s:5:"68337";i:5;s:13:"193142-193358";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"193776-195669";i:10;s:1:"+";i:11;s:11:"Flexsi_0181";i:12;s:28:"TonB-dependent receptor plug";i:13;s:11:"Flexsi_0181";i:14;s:6:"Operon";i:15;s:6:"877226";i:16;s:23:"Flexsi_0181;Flexsi_0182";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015672.1";i:2;s:34:"Flexistipes sinusarabici DSM 4947 ";i:3;s:15:"Deferribacteres";i:4;s:5:"68337";i:5;s:13:"820487-820769";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"818182-820231";i:10;s:1:"-";i:11;s:11:"Flexsi_0777";i:12;s:47:"Anaerobic ribonucleoside-triphosphate reductase";i:13;s:11:"Flexsi_0777";i:14;s:11:"Single gene";i:15;s:7:"3186265";i:16;s:11:"Flexsi_0777";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015672.1";i:2;s:34:"Flexistipes sinusarabici DSM 4947 ";i:3;s:15:"Deferribacteres";i:4;s:5:"68337";i:5;s:15:"2262902-2263009";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2263077-2264190";i:10;s:1:"+";i:11;s:11:"Flexsi_2112";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:11:"Flexsi_2112";i:14;s:6:"Operon";i:15;s:6:"877602";i:16;s:59:"Flexsi_2112;Flexsi_2113;Flexsi_2114;Flexsi_2115;Flexsi_2116";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015672.1";i:2;s:34:"Flexistipes sinusarabici DSM 4947 ";i:3;s:15:"Deferribacteres";i:4;s:5:"68337";i:5;s:15:"2397199-2397339";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2397405-2398437";i:10;s:1:"+";i:11;s:11:"Flexsi_2236";i:12;s:36:"Molybdopterin binding domain protein";i:13;s:11:"Flexsi_2236";i:14;s:6:"Operon";i:15;s:6:"877624";i:16;s:71:"Flexsi_2236;Flexsi_2237;Flexsi_2238;Flexsi_2239;Flexsi_2240;Flexsi_2241";i:17;s:0:"";i:18;s:15:"View Structure ";}}