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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
699058-699223
(-)
ydaO-yuaA
698311-699052 (-)
FsymDg_0607
Transglycosylase-like domain protein
FsymDg_0607
Single gene
DOOR ID:
3178263
FsymDg_0607
View Structure
2
700491-700646
(-)
ydaO-yuaA
699782-700484 (-)
FsymDg_0608
Transglycosylase-like domain protein
FsymDg_0608
Single gene
DOOR ID:
3178264
FsymDg_0608
View Structure
3
743460-743627
(+)
ykoK
744040-745294 (+)
FsymDg_0643
Magnesium and cobalt transport protein CorA
FsymDg_0643
Single gene
DOOR ID:
3178282
FsymDg_0643
View Structure
4
806879-806998
(+)
glycine
807158-810452 (+)
FsymDg_0696
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
FsymDg_0696
Single gene
DOOR ID:
3178313
FsymDg_0696
View Structure
5
932552-932840
(+)
cobalamin
932874-933516 (+)
FsymDg_0790
Cob(II)yrinic acid a;c-diamide reductase
FsymDg_0790
Single gene
DOOR ID:
3178370
FsymDg_0790
View Structure
6
1548384-1548508
(+)
TPP
1548529-1550374 (+)
FsymDg_1324
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
FsymDg_1324
Single gene
DOOR ID:
3178659
FsymDg_1324
View Structure
7
2690107-2690285
(-)
ydaO-yuaA
2689681-2690032 (-)
FsymDg_2255
Transglycosylase-like domain protein
FsymDg_2255
Single gene
DOOR ID:
3179099
FsymDg_2255
View Structure
8
2792718-2792843
(+)
cobalamin
2792946-2795181 (+)
FsymDg_2349
Magnesium chelatase
FsymDg_2349
Operon
DOOR ID:
874968
FsymDg_2349,
FsymDg_2350,
FsymDg_2351,
FsymDg_2352,
FsymDg_2353
View Structure
9
2893987-2894149
(-)
ydaO-yuaA
2893254-2893983 (-)
FsymDg_2439
NLP/P60 protein
FsymDg_2439
Single gene
DOOR ID:
3179184
FsymDg_2439
View Structure
10
3389765-3389908
(-)
cobalamin
3389503-3389725 (-)
FsymDg_2854
FsymDg_2854
Operon
DOOR ID:
875056
FsymDg_2852,
FsymDg_2853,
FsymDg_2854
View Structure
11
3910078-3910206
(-)
FMN
3909129-3909954 (-)
FsymDg_3299
Riboflavin synthase; alpha subunit
FsymDg_3299
Operon
DOOR ID:
875140
FsymDg_3297,
FsymDg_3298,
FsymDg_3299
View Structure
12
4135282-4135454
(+)
ydaO-yuaA
4135458-4136055 (+)
FsymDg_3503
Transglycosylase-like domain protein
FsymDg_3503
Single gene
DOOR ID:
3179597
FsymDg_3503
View Structure
13
5081443-5081613
(+)
ydaO-yuaA
5081801-5082773 (+)
FsymDg_4348
NLP/P60 protein
FsymDg_4348
Single gene
DOOR ID:
3179981
FsymDg_4348
View Structure
14
5183103-5183220
(+)
SAM
5183229-5184504 (+)
FsymDg_4437
Threonine synthase
FsymDg_4437
Single gene
DOOR ID:
3180017
FsymDg_4437
View Structure
Genome:
Frankia symbiont of Datisca glomerata
(
NC_015656.1
);
Phylum:
Actinobacteria
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015656.1";i:2;s:38:"Frankia symbiont of Datisca glomerata ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"699058-699223";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"698311-699052";i:10;s:1:"-";i:11;s:11:"FsymDg_0607";i:12;s:36:"Transglycosylase-like domain protein";i:13;s:11:"FsymDg_0607";i:14;s:11:"Single gene";i:15;s:7:"3178263";i:16;s:11:"FsymDg_0607";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015656.1";i:2;s:38:"Frankia symbiont of Datisca glomerata ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"700491-700646";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"699782-700484";i:10;s:1:"-";i:11;s:11:"FsymDg_0608";i:12;s:36:"Transglycosylase-like domain protein";i:13;s:11:"FsymDg_0608";i:14;s:11:"Single gene";i:15;s:7:"3178264";i:16;s:11:"FsymDg_0608";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015656.1";i:2;s:38:"Frankia symbiont of Datisca glomerata ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"743460-743627";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"744040-745294";i:10;s:1:"+";i:11;s:11:"FsymDg_0643";i:12;s:43:"Magnesium and cobalt transport protein CorA";i:13;s:11:"FsymDg_0643";i:14;s:11:"Single gene";i:15;s:7:"3178282";i:16;s:11:"FsymDg_0643";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015656.1";i:2;s:38:"Frankia symbiont of Datisca glomerata ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"806879-806998";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"807158-810452";i:10;s:1:"+";i:11;s:11:"FsymDg_0696";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:11:"FsymDg_0696";i:14;s:11:"Single gene";i:15;s:7:"3178313";i:16;s:11:"FsymDg_0696";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015656.1";i:2;s:38:"Frankia symbiont of Datisca glomerata ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"932552-932840";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"932874-933516";i:10;s:1:"+";i:11;s:11:"FsymDg_0790";i:12;s:40:"Cob(II)yrinic acid a;c-diamide reductase";i:13;s:11:"FsymDg_0790";i:14;s:11:"Single gene";i:15;s:7:"3178370";i:16;s:11:"FsymDg_0790";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015656.1";i:2;s:38:"Frankia symbiont of Datisca glomerata ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1548384-1548508";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1548529-1550374";i:10;s:1:"+";i:11;s:11:"FsymDg_1324";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"FsymDg_1324";i:14;s:11:"Single gene";i:15;s:7:"3178659";i:16;s:11:"FsymDg_1324";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015656.1";i:2;s:38:"Frankia symbiont of Datisca glomerata ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2690107-2690285";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2689681-2690032";i:10;s:1:"-";i:11;s:11:"FsymDg_2255";i:12;s:36:"Transglycosylase-like domain protein";i:13;s:11:"FsymDg_2255";i:14;s:11:"Single gene";i:15;s:7:"3179099";i:16;s:11:"FsymDg_2255";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015656.1";i:2;s:38:"Frankia symbiont of Datisca glomerata ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2792718-2792843";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2792946-2795181";i:10;s:1:"+";i:11;s:11:"FsymDg_2349";i:12;s:20:"Magnesium chelatase ";i:13;s:11:"FsymDg_2349";i:14;s:6:"Operon";i:15;s:6:"874968";i:16;s:59:"FsymDg_2349;FsymDg_2350;FsymDg_2351;FsymDg_2352;FsymDg_2353";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015656.1";i:2;s:38:"Frankia symbiont of Datisca glomerata ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2893987-2894149";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2893254-2893983";i:10;s:1:"-";i:11;s:11:"FsymDg_2439";i:12;s:15:"NLP/P60 protein";i:13;s:11:"FsymDg_2439";i:14;s:11:"Single gene";i:15;s:7:"3179184";i:16;s:11:"FsymDg_2439";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015656.1";i:2;s:38:"Frankia symbiont of Datisca glomerata ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3389765-3389908";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3389503-3389725";i:10;s:1:"-";i:11;s:11:"FsymDg_2854";i:12;s:0:"";i:13;s:11:"FsymDg_2854";i:14;s:6:"Operon";i:15;s:6:"875056";i:16;s:35:"FsymDg_2852;FsymDg_2853;FsymDg_2854";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015656.1";i:2;s:38:"Frankia symbiont of Datisca glomerata ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3910078-3910206";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3909129-3909954";i:10;s:1:"-";i:11;s:11:"FsymDg_3299";i:12;s:35:"Riboflavin synthase; alpha subunit ";i:13;s:11:"FsymDg_3299";i:14;s:6:"Operon";i:15;s:6:"875140";i:16;s:35:"FsymDg_3297;FsymDg_3298;FsymDg_3299";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015656.1";i:2;s:38:"Frankia symbiont of Datisca glomerata ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4135282-4135454";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"4135458-4136055";i:10;s:1:"+";i:11;s:11:"FsymDg_3503";i:12;s:36:"Transglycosylase-like domain protein";i:13;s:11:"FsymDg_3503";i:14;s:11:"Single gene";i:15;s:7:"3179597";i:16;s:11:"FsymDg_3503";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_015656.1";i:2;s:38:"Frankia symbiont of Datisca glomerata ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5081443-5081613";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"5081801-5082773";i:10;s:1:"+";i:11;s:11:"FsymDg_4348";i:12;s:15:"NLP/P60 protein";i:13;s:11:"FsymDg_4348";i:14;s:11:"Single gene";i:15;s:7:"3179981";i:16;s:11:"FsymDg_4348";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_015656.1";i:2;s:38:"Frankia symbiont of Datisca glomerata ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5183103-5183220";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"5183229-5184504";i:10;s:1:"+";i:11;s:11:"FsymDg_4437";i:12;s:19:"Threonine synthase ";i:13;s:11:"FsymDg_4437";i:14;s:11:"Single gene";i:15;s:7:"3180017";i:16;s:11:"FsymDg_4437";i:17;s:0:"";i:18;s:15:"View Structure ";}}