RiboswitchDB

Genome: Lacinutrix sp. 5H-3-7-4 (NC_015638.1); Phylum: Bacteroidetes/Chlorobi group

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

652252-652375 (-)

SAM

650839-652132 (-)

Lacal_0593

O-acetylhomoserine/O-acetylserine sulfhydrylase (7)

Operon

DOOR ID: 874061

Lacal_0591,
Lacal_0592,
Lacal_0593

2

1433413-1433504 (+)

TPP

1433590-1435852 (+)

Lacal_1243

TonB-dependent receptor

Single gene

DOOR ID: 3177430

Lacal_1243

3

1852906-1853000 (+)

TPP

1853046-1853250 (+)

Lacal_1631

Thiamine biosynthesis protein ThiS

Operon

DOOR ID: 874284

Lacal_1631,
Lacal_1632

4

2260283-2260506 (+)

cobalamin

2260533-2262384 (+)

Lacal_2013

TonB-dependent receptor

Operon

DOOR ID: 874374

Lacal_2013,
Lacal_2014

5

3092926-3092976 (-)

PreQ1

3091935-3092892 (-)

Lacal_2787

PhoH family protein

Operon

DOOR ID: 874529

Lacal_2786,
Lacal_2787

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