About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
23897-24064
(+)
ykoK
24142-26821 (+)
WANG_0040
WANG_0040
Single gene
DOOR ID:
3170628
WANG_0040
View Structure
2
148775-148861
(+)
SMK_box
150078-151539 (+)
WANG_0153
WANG_0153
Operon
DOOR ID:
870795
WANG_0152,
WANG_0153
View Structure
3
742065-742123
(-)
fluoride
741627-742017 (-)
WANG_0680
WANG_0680
Operon
DOOR ID:
870903
WANG_0679,
WANG_0680
View Structure
4
766847-766959
(-)
FMN
766077-766767 (-)
WANG_0704
WANG_0704
Single gene
DOOR ID:
3170861
WANG_0704
View Structure
5
871596-871769
(-)
lysine
870195-871509 (-)
WANG_0797
WANG_0797
Operon
DOOR ID:
870931
WANG_0791,
WANG_0792,
WANG_0793,
WANG_0794,
WANG_0795,
WANG_0796,
WANG_0797
View Structure
6
1162882-1162972
(-)
TPP
1162259-1162838 (-)
WANG_1060
WANG_1060
Single gene
DOOR ID:
3170976
WANG_1060
View Structure
7
1595483-1595543
(+)
fluoride
1595615-1596902 (+)
eno
WANG_1440
Single gene
DOOR ID:
3171143
WANG_1440
(eno)
View Structure
8
1654661-1654758
(-)
purine
1653275-1654586 (-)
WANG_1490
WANG_1490
Single gene
DOOR ID:
3171162
WANG_1490
View Structure
9
1664391-1664559
(+)
cobalamin
1664748-1667178 (+)
WANG_1500
WANG_1500
Single gene
DOOR ID:
3171170
WANG_1500
View Structure
10
1859438-1859611
(-)
lysine
1857713-1859327 (-)
WANG_1669
WANG_1669
Operon
DOOR ID:
871102
WANG_1668,
WANG_1669
View Structure
11
2027007-2027170
(+)
ykoK
2027253-2029917 (+)
mgtA
WANG_1836
Operon
DOOR ID:
871138
WANG_1835,
WANG_1836
(mgtA)
,
WANG_1837,
WANG_1838
View Structure
12
2057300-2057397
(-)
purine
2056651-2057230 (-)
WANG_1861
WANG_1861
Operon
DOOR ID:
871146
WANG_1860,
WANG_1861
View Structure
Genome:
Lactobacillus kefiranofaciens ZW3
(
NC_015602.1
);
Phylum:
Firmicutes
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015602.1";i:2;s:34:"Lactobacillus kefiranofaciens ZW3 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"23897-24064";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:11:"24142-26821";i:10;s:1:"+";i:11;s:9:"WANG_0040";i:12;s:0:"";i:13;s:9:"WANG_0040";i:14;s:11:"Single gene";i:15;s:7:"3170628";i:16;s:9:"WANG_0040";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015602.1";i:2;s:34:"Lactobacillus kefiranofaciens ZW3 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"148775-148861";i:6;s:1:"+";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:13:"150078-151539";i:10;s:1:"+";i:11;s:9:"WANG_0153";i:12;s:0:"";i:13;s:9:"WANG_0153";i:14;s:6:"Operon";i:15;s:6:"870795";i:16;s:19:"WANG_0152;WANG_0153";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015602.1";i:2;s:34:"Lactobacillus kefiranofaciens ZW3 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"742065-742123";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"741627-742017";i:10;s:1:"-";i:11;s:9:"WANG_0680";i:12;s:0:"";i:13;s:9:"WANG_0680";i:14;s:6:"Operon";i:15;s:6:"870903";i:16;s:19:"WANG_0679;WANG_0680";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015602.1";i:2;s:34:"Lactobacillus kefiranofaciens ZW3 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"766847-766959";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"766077-766767";i:10;s:1:"-";i:11;s:9:"WANG_0704";i:12;s:0:"";i:13;s:9:"WANG_0704";i:14;s:11:"Single gene";i:15;s:7:"3170861";i:16;s:9:"WANG_0704";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015602.1";i:2;s:34:"Lactobacillus kefiranofaciens ZW3 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"871596-871769";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"870195-871509";i:10;s:1:"-";i:11;s:9:"WANG_0797";i:12;s:0:"";i:13;s:9:"WANG_0797";i:14;s:6:"Operon";i:15;s:6:"870931";i:16;s:69:"WANG_0791;WANG_0792;WANG_0793;WANG_0794;WANG_0795;WANG_0796;WANG_0797";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015602.1";i:2;s:34:"Lactobacillus kefiranofaciens ZW3 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1162882-1162972";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1162259-1162838";i:10;s:1:"-";i:11;s:9:"WANG_1060";i:12;s:0:"";i:13;s:9:"WANG_1060";i:14;s:11:"Single gene";i:15;s:7:"3170976";i:16;s:9:"WANG_1060";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015602.1";i:2;s:34:"Lactobacillus kefiranofaciens ZW3 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1595483-1595543";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1595615-1596902";i:10;s:1:"+";i:11;s:3:"eno";i:12;s:0:"";i:13;s:9:"WANG_1440";i:14;s:11:"Single gene";i:15;s:7:"3171143";i:16;s:14:"WANG_1440(eno)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015602.1";i:2;s:34:"Lactobacillus kefiranofaciens ZW3 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1654661-1654758";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1653275-1654586";i:10;s:1:"-";i:11;s:9:"WANG_1490";i:12;s:0:"";i:13;s:9:"WANG_1490";i:14;s:11:"Single gene";i:15;s:7:"3171162";i:16;s:9:"WANG_1490";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015602.1";i:2;s:34:"Lactobacillus kefiranofaciens ZW3 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1664391-1664559";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1664748-1667178";i:10;s:1:"+";i:11;s:9:"WANG_1500";i:12;s:0:"";i:13;s:9:"WANG_1500";i:14;s:11:"Single gene";i:15;s:7:"3171170";i:16;s:9:"WANG_1500";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015602.1";i:2;s:34:"Lactobacillus kefiranofaciens ZW3 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1859438-1859611";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1857713-1859327";i:10;s:1:"-";i:11;s:9:"WANG_1669";i:12;s:0:"";i:13;s:9:"WANG_1669";i:14;s:6:"Operon";i:15;s:6:"871102";i:16;s:19:"WANG_1668;WANG_1669";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015602.1";i:2;s:34:"Lactobacillus kefiranofaciens ZW3 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2027007-2027170";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2027253-2029917";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:9:"WANG_1836";i:14;s:6:"Operon";i:15;s:6:"871138";i:16;s:45:"WANG_1835;WANG_1836(mgtA);WANG_1837;WANG_1838";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015602.1";i:2;s:34:"Lactobacillus kefiranofaciens ZW3 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2057300-2057397";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2056651-2057230";i:10;s:1:"-";i:11;s:9:"WANG_1861";i:12;s:0:"";i:13;s:9:"WANG_1861";i:14;s:6:"Operon";i:15;s:6:"871146";i:16;s:19:"WANG_1860;WANG_1861";i:17;s:0:"";i:18;s:15:"View Structure ";}}