About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
74206-74281
(-)
c-di-GMP-I
60456-74061 (-)
Sphch_2975
Outer membrane autotransporter barrel domain protein
Sphch_2975
single gene
DOOR ID:
3168473
Sphch_2975
View Structure
2
585491-585739
(-)
cobalamin
583329-585312 (-)
Sphch_3419
TonB-dependent receptor
Sphch_3419
Single gene
DOOR ID:
3168647
Sphch_3419
View Structure
3
951236-951426
(+)
cobalamin
951617-952025 (+)
Sphch_3739
Sphch_3739
Operon
DOOR ID:
869494
Sphch_3739,
Sphch_3740,
Sphch_3741,
Sphch_3742,
Sphch_3743,
Sphch_3744,
Sphch_3745
View Structure
4
979119-979336
(-)
cobalamin
977873-979010 (-)
Sphch_3765
Precorrin-3B synthase
Sphch_3765
Operon
DOOR ID:
869499
Sphch_3762,
Sphch_3763,
Sphch_3764,
Sphch_3765
View Structure
5
986888-987116
(-)
cobalamin
985655-986735 (-)
Sphch_3770
Nickel/cobalt efflux system
Sphch_3770
Operon
DOOR ID:
869500
Sphch_3766,
Sphch_3767,
Sphch_3768,
Sphch_3769,
Sphch_3770
View Structure
Genome:
Sphingobium chlorophenolicum L-1 chromosome II
(
NC_015594.1
);
Phylum:
Alphaproteobacteria
a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015594.1";i:2;s:46:"Sphingobium chlorophenolicum L-1 chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:11:"74206-74281";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:11:"60456-74061";i:10;s:1:"-";i:11;s:10:"Sphch_2975";i:12;s:52:"Outer membrane autotransporter barrel domain protein";i:13;s:10:"Sphch_2975";i:14;s:11:"single gene";i:15;s:7:"3168473";i:16;s:10:"Sphch_2975";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015594.1";i:2;s:46:"Sphingobium chlorophenolicum L-1 chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"585491-585739";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"583329-585312";i:10;s:1:"-";i:11;s:10:"Sphch_3419";i:12;s:23:"TonB-dependent receptor";i:13;s:10:"Sphch_3419";i:14;s:11:"Single gene";i:15;s:7:"3168647";i:16;s:10:"Sphch_3419";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015594.1";i:2;s:46:"Sphingobium chlorophenolicum L-1 chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"951236-951426";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"951617-952025";i:10;s:1:"+";i:11;s:10:"Sphch_3739";i:12;s:0:"";i:13;s:10:"Sphch_3739";i:14;s:6:"Operon";i:15;s:6:"869494";i:16;s:76:"Sphch_3739;Sphch_3740;Sphch_3741;Sphch_3742;Sphch_3743;Sphch_3744;Sphch_3745";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015594.1";i:2;s:46:"Sphingobium chlorophenolicum L-1 chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"979119-979336";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"977873-979010";i:10;s:1:"-";i:11;s:10:"Sphch_3765";i:12;s:21:"Precorrin-3B synthase";i:13;s:10:"Sphch_3765";i:14;s:6:"Operon";i:15;s:6:"869499";i:16;s:43:"Sphch_3762;Sphch_3763;Sphch_3764;Sphch_3765";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015594.1";i:2;s:46:"Sphingobium chlorophenolicum L-1 chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"986888-987116";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"985655-986735";i:10;s:1:"-";i:11;s:10:"Sphch_3770";i:12;s:27:"Nickel/cobalt efflux system";i:13;s:10:"Sphch_3770";i:14;s:6:"Operon";i:15;s:6:"869500";i:16;s:54:"Sphch_3766;Sphch_3767;Sphch_3768;Sphch_3769;Sphch_3770";i:17;s:0:"";i:18;s:15:"View Structure ";}}