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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
56381-56485
(+)
glycine
56696-59618 (+)
Isova_0055
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Isova_0055
Operon
DOOR ID:
866440
Isova_0055,
Isova_0056,
Isova_0057
View Structure
2
72175-72281
(-)
SAM
71140-72169 (-)
Isova_0067
Methylenetetrahydrofolate reductase (0)
Isova_0067
Operon
DOOR ID:
866441
Isova_0066,
Isova_0067
View Structure
3
342431-342545
(+)
SAM-IV
342573-344016 (+)
Isova_0328
Cysteine desulfurase
Isova_0328
Single gene
DOOR ID:
3163188
Isova_0328
View Structure
4
667428-667532
(+)
TPP
669468-671046 (+)
Isova_0622
Diaminobutyrate decarboxylase (6)
Isova_0622
Operon
DOOR ID:
866547
Isova_0622,
Isova_0623,
Isova_0624,
Isova_0625,
Isova_0626
View Structure
5
778684-778784
(+)
TPP
778803-779973 (+)
Isova_0733
Glycine oxidase ThiO
Isova_0733
Operon
DOOR ID:
866569
Isova_0733,
Isova_0734,
Isova_0735
View Structure
6
813758-813844
(+)
ZMP-ZTP
813877-815512 (+)
Isova_0766
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
Isova_0766
Single gene
DOOR ID:
3163320
Isova_0766
View Structure
7
867090-867177
(+)
ZMP-ZTP
867239-868523 (+)
Isova_0804
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Isova_0804
Operon
DOOR ID:
866587
Isova_0804,
Isova_0805
View Structure
8
1641694-1641823
(+)
FMN
1641928-1643026 (+)
Isova_1506
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Isova_1506
Operon
DOOR ID:
866738
Isova_1506,
Isova_1507,
Isova_1508,
Isova_1509
View Structure
9
1659724-1659819
(+)
TPP
1660767-1662678 (+)
Isova_1525
Xenobiotic-transporting ATPase (4)
Isova_1525
Operon
DOOR ID:
866741
Isova_1524,
Isova_1525,
Isova_1526
View Structure
10
1709380-1709443
(-)
ykkC-III
1709054-1709369 (-)
Isova_1574
Isova_1574
single gene
DOOR ID:
3163544
Isova_1574
View Structure
11
2822467-2822633
(-)
ydaO-yuaA
2821644-2822466 (-)
Isova_2579
NLP/P60 protein
Isova_2579
Single gene
DOOR ID:
3163845
Isova_2579
View Structure
12
2823653-2823845
(-)
ydaO-yuaA
2822858-2823650 (-)
Isova_2580
NLP/P60 protein
Isova_2580
Single gene
DOOR ID:
3163846
Isova_2580
View Structure
13
2830331-2830449
(-)
SAM-IV
2829602-2830322 (-)
Isova_2587
Isova_2587
Operon
DOOR ID:
866974
Isova_2585,
Isova_2586,
Isova_2587
View Structure
14
3001318-3001453
(+)
FMN
3001581-3002298 (+)
Isova_2751
Nicotinamide mononucleotide transporter PnuC
Isova_2751
Single gene
DOOR ID:
3163904
Isova_2751
View Structure
15
3087223-3087326
(-)
TPP
3086037-3087141 (-)
Isova_2824
ABC transporter; periplasmic binding protein; thiB subfamily
Isova_2824
Operon
DOOR ID:
867018
Isova_2822,
Isova_2823,
Isova_2824
View Structure
Genome:
Isoptericola variabilis 225
(
NC_015588.1
);
Phylum:
Actinobacteria
a:16:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015588.1";i:2;s:28:"Isoptericola variabilis 225 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"56381-56485";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:11:"56696-59618";i:10;s:1:"+";i:11;s:10:"Isova_0055";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:10:"Isova_0055";i:14;s:6:"Operon";i:15;s:6:"866440";i:16;s:32:"Isova_0055;Isova_0056;Isova_0057";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015588.1";i:2;s:28:"Isoptericola variabilis 225 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"72175-72281";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"71140-72169";i:10;s:1:"-";i:11;s:10:"Isova_0067";i:12;s:39:"Methylenetetrahydrofolate reductase (0)";i:13;s:10:"Isova_0067";i:14;s:6:"Operon";i:15;s:6:"866441";i:16;s:21:"Isova_0066;Isova_0067";i:17;s:143:"cellular amino acid biosynthetic process [GO:0008652]; methionine metabolic process [GO:0006555]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015588.1";i:2;s:28:"Isoptericola variabilis 225 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"342431-342545";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:13:"342573-344016";i:10;s:1:"+";i:11;s:10:"Isova_0328";i:12;s:21:"Cysteine desulfurase ";i:13;s:10:"Isova_0328";i:14;s:11:"Single gene";i:15;s:7:"3163188";i:16;s:10:"Isova_0328";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015588.1";i:2;s:28:"Isoptericola variabilis 225 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"667428-667532";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"669468-671046";i:10;s:1:"+";i:11;s:10:"Isova_0622";i:12;s:33:"Diaminobutyrate decarboxylase (6)";i:13;s:10:"Isova_0622";i:14;s:6:"Operon";i:15;s:6:"866547";i:16;s:54:"Isova_0622;Isova_0623;Isova_0624;Isova_0625;Isova_0626";i:17;s:50:"cellular amino acid metabolic process [GO:0006520]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015588.1";i:2;s:28:"Isoptericola variabilis 225 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"778684-778784";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"778803-779973";i:10;s:1:"+";i:11;s:10:"Isova_0733";i:12;s:20:"Glycine oxidase ThiO";i:13;s:10:"Isova_0733";i:14;s:6:"Operon";i:15;s:6:"866569";i:16;s:32:"Isova_0733;Isova_0734;Isova_0735";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015588.1";i:2;s:28:"Isoptericola variabilis 225 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"813758-813844";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"813877-815512";i:10;s:1:"+";i:11;s:10:"Isova_0766";i:12;s:155:"Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]";i:13;s:10:"Isova_0766";i:14;s:11:"Single gene";i:15;s:7:"3163320";i:16;s:10:"Isova_0766";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015588.1";i:2;s:28:"Isoptericola variabilis 225 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"867090-867177";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"867239-868523";i:10;s:1:"+";i:11;s:10:"Isova_0804";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:10:"Isova_0804";i:14;s:6:"Operon";i:15;s:6:"866587";i:16;s:21:"Isova_0804;Isova_0805";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015588.1";i:2;s:28:"Isoptericola variabilis 225 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1641694-1641823";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1641928-1643026";i:10;s:1:"+";i:11;s:10:"Isova_1506";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:10:"Isova_1506";i:14;s:6:"Operon";i:15;s:6:"866738";i:16;s:43:"Isova_1506;Isova_1507;Isova_1508;Isova_1509";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015588.1";i:2;s:28:"Isoptericola variabilis 225 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1659724-1659819";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1660767-1662678";i:10;s:1:"+";i:11;s:10:"Isova_1525";i:12;s:34:"Xenobiotic-transporting ATPase (4)";i:13;s:10:"Isova_1525";i:14;s:6:"Operon";i:15;s:6:"866741";i:16;s:32:"Isova_1524;Isova_1525;Isova_1526";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015588.1";i:2;s:28:"Isoptericola variabilis 225 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1709380-1709443";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"1709054-1709369";i:10;s:1:"-";i:11;s:10:"Isova_1574";i:12;s:0:"";i:13;s:10:"Isova_1574";i:14;s:11:"single gene";i:15;s:7:"3163544";i:16;s:10:"Isova_1574";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015588.1";i:2;s:28:"Isoptericola variabilis 225 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2822467-2822633";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2821644-2822466";i:10;s:1:"-";i:11;s:10:"Isova_2579";i:12;s:15:"NLP/P60 protein";i:13;s:10:"Isova_2579";i:14;s:11:"Single gene";i:15;s:7:"3163845";i:16;s:10:"Isova_2579";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015588.1";i:2;s:28:"Isoptericola variabilis 225 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2823653-2823845";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2822858-2823650";i:10;s:1:"-";i:11;s:10:"Isova_2580";i:12;s:15:"NLP/P60 protein";i:13;s:10:"Isova_2580";i:14;s:11:"Single gene";i:15;s:7:"3163846";i:16;s:10:"Isova_2580";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_015588.1";i:2;s:28:"Isoptericola variabilis 225 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2830331-2830449";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"2829602-2830322";i:10;s:1:"-";i:11;s:10:"Isova_2587";i:12;s:0:"";i:13;s:10:"Isova_2587";i:14;s:6:"Operon";i:15;s:6:"866974";i:16;s:32:"Isova_2585;Isova_2586;Isova_2587";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_015588.1";i:2;s:28:"Isoptericola variabilis 225 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3001318-3001453";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3001581-3002298";i:10;s:1:"+";i:11;s:10:"Isova_2751";i:12;s:44:"Nicotinamide mononucleotide transporter PnuC";i:13;s:10:"Isova_2751";i:14;s:11:"Single gene";i:15;s:7:"3163904";i:16;s:10:"Isova_2751";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_015588.1";i:2;s:28:"Isoptericola variabilis 225 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3087223-3087326";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3086037-3087141";i:10;s:1:"-";i:11;s:10:"Isova_2824";i:12;s:60:"ABC transporter; periplasmic binding protein; thiB subfamily";i:13;s:10:"Isova_2824";i:14;s:6:"Operon";i:15;s:6:"867018";i:16;s:32:"Isova_2822;Isova_2823;Isova_2824";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}}