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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
49634-49776
(-)
FMN
48490-49579 (-)
TREPR_0233
MemBrane lipoprotein TpN38(B)
TREPR_0233
Operon
DOOR ID:
864256
TREPR_0236,
TREPR_0235,
TREPR_0234,
TREPR_0233
View Structure
2
331856-331952
(+)
glycine
332131-333217 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
TREPR_3840
Operon
DOOR ID:
864314
TREPR_3840
(gcvT)
,
TREPR_3839
(gcvH)
,
TREPR_3838,
TREPR_3837,
TREPR_3836,
TREPR_3835
View Structure
3
878936-879144
(+)
cobalamin
879667-880534 (+)
TREPR_3281
TREPR_3281
Operon
DOOR ID:
864429
TREPR_3281,
TREPR_3280
View Structure
4
937418-937521
(-)
TPP
936236-937283 (-)
TREPR_3219
Thiamine-binding periplasmic protein
TREPR_3219
Operon
DOOR ID:
864444
TREPR_3221,
TREPR_3220,
TREPR_3219,
TREPR_3218,
TREPR_3217,
TREPR_3216,
TREPR_3215
View Structure
5
2402666-2402887
(-)
cobalamin
2401559-2402393 (-)
TREPR_1846
FdhC protein
TREPR_1846
Single gene
DOOR ID:
3160611
TREPR_1846
View Structure
6
3796861-3797124
(-)
cobalamin
3796128-3796686 (-)
TREPR_0536
TREPR_0536
Operon
DOOR ID:
864992
TREPR_0542,
TREPR_0541,
TREPR_0540,
TREPR_0539,
TREPR_0538,
TREPR_0537,
TREPR_0536
View Structure
7
3814871-3815002
(-)
cobalamin
3812806-3814774 (-)
TREPR_0518
Putative outer membrane protein
TREPR_0518
Operon
DOOR ID:
864994
TREPR_0523
(cobJ)
,
TREPR_0522,
TREPR_0521
(cobM)
,
TREPR_0520
(cbiD)
,
TREPR_0519,
TREPR_0518
View Structure
Genome:
Treponema primitia ZAS-2
(
NC_015578.1
);
Phylum:
Spirochaetia
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