Genome: Desulfotomaculum kuznetsovii DSM 6115 (NC_015573.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 239089-239178 (-)c-di-GMP-I238843-239017 (-)Desku_0226

Uncharacterized protein		Desku_0226single gene

DOOR ID: 3155241		Desku_0226 View Structure
2 290267-290541 (+)cobalamin290648-291947 (+)Desku_0278

Phosphomethylpyrimidine synthase		Desku_0278Operon

DOOR ID: 862349		Desku_0278,
Desku_0279		 View Structure
3 560191-560365 (+)TPP560419-561508 (+)Desku_0543

Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)		Desku_0543Operon

DOOR ID: 862404		Desku_0543,
Desku_0544,
Desku_0545		 View Structure
4 569329-569414 (+)c-di-GMP-I569624-570869 (+)Desku_0553

ATP-binding region ATPase domain protein		Desku_0553operon

DOOR ID: 862406		Desku_0553,
Desku_0554,
Desku_0555,
Desku_0556		 View Structure
5 668125-668210 (+)c-di-GMP-I668636-668987 (+)Desku_0633

Uncharacterized protein		Desku_0633operon

DOOR ID: 862422		Desku_0633,
Desku_0634		 View Structure
6 771180-771270 (+)c-di-GMP-I771366-771999 (+)Desku_0721

Metal dependent phosphohydrolase		Desku_0721single gene

DOOR ID: 3155414		Desku_0721 View Structure
7 885656-885746 (+)c-di-GMP-I885846-887661 (+)Desku_0845

Ig domain protein group 2 domain protein		Desku_0845single gene

DOOR ID: 3155451		Desku_0845 View Structure
8 1031343-1031624 (+)cobalamin1031709-1032777 (+)Desku_1002

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		Desku_1002Single gene

DOOR ID: 3155487		Desku_1002 View Structure
9 1050220-1050361 (+)c-di-GMP-I1050679-1051303 (+)Desku_1023

Metal dependent phosphohydrolase		Desku_1023single gene

DOOR ID: 3155492		Desku_1023 View Structure
10 1207507-1207683 (+)ydaO-yuaA1207821-1209084 (+)Desku_1193

Lysine 2;3-aminomutase YodO family protein 		Desku_1193Single gene

DOOR ID: 3155544		Desku_1193 View Structure
11 1259350-1259502 (+)FMN1259542-1260718 (+)Desku_1244

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Desku_1244Operon

DOOR ID: 862551		Desku_1244,
Desku_1245,
Desku_1246		 View Structure
12 1477749-1478024 (-)cobalamin1476517-1477621 (-)Desku_1468

Cobalt-precorrin-5B C(1)-methyltransferase (95) (Cobalt-precorrin-6A synthase)		Desku_1468Operon

DOOR ID: 862591		Desku_1459,
Desku_1460,
Desku_1461,
Desku_1462,
Desku_1463,
Desku_1464,
Desku_1465,
Desku_1466,
Desku_1467,
Desku_1468		 View Structure
13 1639914-1640062 (+)SAM1640145-1641339 (+)Desku_1645

Desku_1645Operon

DOOR ID: 862632		Desku_1645,
Desku_1646,
Desku_1647		 View Structure
14 1656422-1656532 (-)TPP1655547-1656321 (-)Desku_1659

Thiamine thiazole synthase 		Desku_1659Single gene

DOOR ID: 3155680		Desku_1659 View Structure
15 1707464-1707578 (-)ykkC-yxkD1706014-1707391 (-)Desku_1703

Xanthine/uracil/vitamin C permease		Desku_1703Operon

DOOR ID: 862644		Desku_1695,
Desku_1696,
Desku_1697,
Desku_1698,
Desku_1699,
Desku_1700,
Desku_1701,
Desku_1702,
Desku_1703		 View Structure
16 1790561-1790648 (-)c-di-GMP-I1790049-1790451 (-)Desku_1788

Flagellar basal body rod protein FlgB		Desku_1788operon

DOOR ID: 862660		Desku_1782,
Desku_1783,
Desku_1784,
Desku_1785,
Desku_1786,
Desku_1787,
Desku_1788		 View Structure
17 1831607-1831767 (-)ydaO-yuaA1830791-1831607 (-)Desku_1830

Cell wall hydrolase SleB		Desku_1830Single gene

DOOR ID: 3155727		Desku_1830 View Structure
18 1875671-1875859 (-)lysine1871173-1873810 (-)Desku_1871

CBS domain containing protein		Desku_1871Operon

DOOR ID: 862676		Desku_1868,
Desku_1869,
Desku_1870,
Desku_1871		 View Structure
19 2086431-2086514 (-)c-di-GMP-II2084803-2086342 (-)Desku_2106

Undecaprenyl-phosphate galactose phosphotransferase; WbaP 		Desku_2106Single gene

DOOR ID: 3155811		Desku_2106 View Structure
20 2179940-2180221 (-)cobalamin2178640-2179765 (-)Desku_2194

ABC-type transporter; periplasmic subunit		Desku_2194Operon

DOOR ID: 862738		Desku_2187,
Desku_2188,
Desku_2189,
Desku_2190,
Desku_2191,
Desku_2192,
Desku_2193,
Desku_2194		 View Structure
21 2243373-2243651 (-)cobalamin2242423-2243251 (-)Desku_2245

Uncharacterized conserved protein UCP037409; membrane transporter; MTH672		Desku_2245Operon

DOOR ID: 862754		Desku_2242,
Desku_2243,
Desku_2244,
Desku_2245		 View Structure
22 2243825-2244096 (-)cobalamin2242423-2243251 (-)Desku_2245

Uncharacterized conserved protein UCP037409; membrane transporter; MTH672		Desku_2245Operon

DOOR ID: 862754		Desku_2242,
Desku_2243,
Desku_2244,
Desku_2245		 View Structure
23 2268897-2268980 (+)c-di-GMP-II2269011-2270178 (+)Desku_2272

Diguanylate cyclase		Desku_2272Single gene

DOOR ID: 3155854		Desku_2272 View Structure
24 2376315-2376488 (-)cobalamin2375642-2376209 (-)Desku_2371

Adenosylcobinamide-phosphate guanylyltransferase (2)		Desku_2371Operon

DOOR ID: 862783		Desku_2370,
Desku_2371		 View Structure
25 2630559-2630622 (+)fluoride2630683-2631856 (+)Desku_2647

Sodium/hydrogen exchanger		Desku_2647Single gene

DOOR ID: 3155966		Desku_2647 View Structure
26 2632433-2632494 (+)fluoride2632658-2633810 (+)Desku_2649

Major facilitator superfamily MFS_1		Desku_2649Single gene

DOOR ID: 3155968		Desku_2649 View Structure
27 2718262-2718420 (+)ydaO-yuaA2718563-2719625 (+)Desku_2742

ABC-type glycine betaine transport; periplasmic subunit		Desku_2742Operon

DOOR ID: 862862		Desku_2742,
Desku_2743,
Desku_2744		 View Structure
28 2737106-2737195 (+)c-di-GMP-I2737347-2738745 (+)Desku_2759

Citrate transporter		Desku_2759operon

DOOR ID: 862864		Desku_2759,
Desku_2760		 View Structure
29 2876252-2876436 (-)glmS2874289-2876119 (-)Desku_2879

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Desku_2879Single gene

DOOR ID: 3156054		Desku_2879 View Structure
30 2893898-2894011 (-)ykkC-yxkD2892840-2893749 (-)Desku_2894

Branched-chain-amino-acid aminotransferase (BCAT) (2)		Desku_2894Operon

DOOR ID: 862891		Desku_2884,
Desku_2885,
Desku_2886,
Desku_2887,
Desku_2888,
Desku_2889,
Desku_2890,
Desku_2891,
Desku_2892,
Desku_2893,
Desku_2894		 View Structure
31 2904046-2904328 (-)cobalamin2902935-2903679 (-)Desku_2905

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		Desku_2905Operon

DOOR ID: 862892		Desku_2902,
Desku_2903,
Desku_2904,
Desku_2905		 View Structure
32 2939793-2939911 (+)MOCO2940244-2941138 (+)Desku_2938

Extracellular solute-binding protein family 1		Desku_2938Single gene

DOOR ID: 3156080		Desku_2938 View Structure