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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
377169-377395
(-)
cobalamin
375241-377059 (-)
Metme_0352
TonB-dependent receptor plug
Metme_0352
Single gene
DOOR ID:
3153865
Metme_0352
View Structure
2
477526-477609
(+)
c-di-GMP-I
477679-478795 (+)
Metme_0448
Uncharacterized protein
Metme_0448
operon
DOOR ID:
861423
Metme_0448,
Metme_0449,
Metme_0450
View Structure
3
986079-986231
(+)
c-di-GMP-I
986267-987062 (+)
Metme_0918
Uncharacterized protein
Metme_0918
operon
DOOR ID:
861519
Metme_0918,
Metme_0919
View Structure
4
990642-990719
(+)
c-di-GMP-I
990757-1001173 (+)
Metme_0921
Filamentous hemagglutinin family outer membrane protein
Metme_0921
single gene
DOOR ID:
3154045
Metme_0921
View Structure
5
3052683-3052770
(-)
c-di-GMP-I
3051762-3052575 (-)
Metme_2761
PEP motif putative anchor domain protein
Metme_2761
operon
DOOR ID:
861903
Metme_2760,
Metme_2761
View Structure
6
3378022-3378100
(-)
c-di-GMP-I
3377179-3377926 (-)
Metme_3044
Uncharacterized protein
Metme_3044
operon
DOOR ID:
861961
Metme_3043,
Metme_3044
View Structure
7
3452024-3452241
(+)
cobalamin
3452357-3455150 (+)
Metme_3119
Ribonucleoside-diphosphate reductase
Metme_3119
Operon
DOOR ID:
861973
Metme_3119,
Metme_3120
View Structure
8
3678733-3678843
(+)
TPP
3678894-3680763 (+)
Metme_3340
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Metme_3340
Single gene
DOOR ID:
3154796
Metme_3340
View Structure
9
4651029-4651110
(-)
c-di-GMP-I
4650170-4650938 (-)
Metme_4227
Uncharacterized protein
Metme_4227
single gene
DOOR ID:
3155044
Metme_4227
View Structure
10
4842484-4842565
(-)
c-di-GMP-I
4841687-4842413 (-)
Metme_4410
Uncharacterized protein
Metme_4410
single gene
DOOR ID:
3155104
Metme_4410
View Structure
Genome:
Methylomonas methanica MC09
(
NC_015572.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015572.1";i:2;s:28:"Methylomonas methanica MC09 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4651029-4651110";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"4650170-4650938";i:10;s:1:"-";i:11;s:10:"Metme_4227";i:12;s:23:"Uncharacterized protein";i:13;s:10:"Metme_4227";i:14;s:11:"single gene";i:15;s:7:"3155044";i:16;s:10:"Metme_4227";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015572.1";i:2;s:28:"Methylomonas methanica MC09 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4842484-4842565";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"4841687-4842413";i:10;s:1:"-";i:11;s:10:"Metme_4410";i:12;s:23:"Uncharacterized protein";i:13;s:10:"Metme_4410";i:14;s:11:"single gene";i:15;s:7:"3155104";i:16;s:10:"Metme_4410";i:17;s:0:"";i:18;s:15:"View Structure ";}}
