Genome: Desulfotomaculum carboxydivorans CO-1-SRB (NC_015565.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 63570-63668 (+)TPP63845-65054 (+)Desca_0060

Hydroxymethylpyrimidine transporter CytX		Desca_0060Single gene

DOOR ID: 3147779		Desca_0060 View Structure
2 72868-72991 (+)ydaO-yuaA72996-73983 (+)Desca_0069

Sporulation uncharacterized protein YkwD		Desca_0069Single gene

DOOR ID: 3147785		Desca_0069 View Structure
3 89443-89554 (+)SAM89644-90847 (+)Desca_0089

Desca_0089Operon

DOOR ID: 859364		Desca_0089,
Desca_0090,
Desca_0091,
Desca_0092,
Desca_0093		 View Structure
4 293234-293390 (+)glmS293517-295347 (+)Desca_0280

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Desca_0280Single gene

DOOR ID: 3147843		Desca_0280 View Structure
5 349861-350042 (-)cobalamin348940-349687 (-)Desca_0336

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		Desca_0336Single gene

DOOR ID: 3147859		Desca_0336 View Structure
6 480321-480435 (+)TPP480507-481158 (+)Desca_0459

Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)		Desca_0459Operon

DOOR ID: 859435		Desca_0459,
Desca_0460		 View Structure
7 575141-575301 (-)ydaO-yuaA574292-575135 (-)Desca_0532

Cell wall hydrolase SleB		Desca_0532Single gene

DOOR ID: 3147942		Desca_0532 View Structure
8 616060-616194 (+)ydaO-yuaA616197-616845 (+)Desca_0565

NLP/P60 protein		Desca_0565Single gene

DOOR ID: 3147951		Desca_0565 View Structure
9 630464-630649 (+)cobalamin630725-631781 (+)Desca_0577

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		Desca_0577Single gene

DOOR ID: 3147955		Desca_0577 View Structure
10 682822-682909 (-)c-di-GMP-I681434-682412 (-)Desca_0626

Bile acid:sodium symporter		Desca_0626single gene

DOOR ID: 3147964		Desca_0626 View Structure
11 949053-949175 (+)MOCO949308-950187 (+)Desca_0861

Extracellular solute-binding protein		Desca_0861Single gene

DOOR ID: 3148043		Desca_0861 View Structure
12 1164741-1164834 (+)ykkC-yxkD1165147-1166188 (+)Desca_1040

Aliphatic sulfonates family ABC transporter; periplasmic ligand-binding protein		Desca_1040Operon

DOOR ID: 859550		Desca_1040,
Desca_1041,
Desca_1042,
Desca_1043,
Desca_1044,
Desca_1045		 View Structure
13 1182739-1182858 (+)yybP-ykoY1182920-1183277 (-)Desca_1060

Desca_1060Operon

DOOR ID: 859555		Desca_1060,
Desca_1061		 View Structure
14 1186534-1186661 (+)FMN1186766-1187894 (+)Desca_1064

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Desca_1064Operon

DOOR ID: 859557		Desca_1064,
Desca_1065,
Desca_1066,
Desca_1067		 View Structure
15 1335273-1335367 (+)glycine1335499-1336897 (+)Desca_1217

Amino acid carrier protein		Desca_1217Single gene

DOOR ID: 3148170		Desca_1217 View Structure
16 1338925-1339100 (-)lysine1337038-1338802 (-)Desca_1218

Na+/H+ antiporter NhaC-like protein		Desca_1218Single gene

DOOR ID: 3148171		Desca_1218 View Structure
17 1378454-1378606 (-)ydaO-yuaA1377057-1377513 (-)Desca_1255

UPF0756 membrane protein Desca_1255		Desca_1255Single gene

DOOR ID: 3148189		Desca_1255 View Structure
18 1503095-1503198 (+)glycine1503378-1505139 (+)Desca_1380

Formate--tetrahydrofolate ligase (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)		Desca_1380Single gene

DOOR ID: 3148232		Desca_1380 View Structure
19 1660769-1660910 (-)ydaO-yuaA1659494-1660763 (-)Desca_1530

Lysine 2;3-aminomutase YodO family protein 		Desca_1530Single gene

DOOR ID: 3148286		Desca_1530 View Structure
20 1700312-1700427 (-)MOCO1697114-1699892 (-)Desca_1570

Aldehyde dehydrogenase (FAD-independent) 		Desca_1570Single gene

DOOR ID: 3148298		Desca_1570 View Structure
21 1701596-1701712 (-)MOCO1700499-1701519 (-)Desca_1571

Molybdopterin binding domain protein		Desca_1571Single gene

DOOR ID: 3148299		Desca_1571 View Structure
22 1732390-1732497 (-)SAM1731669-1732323 (-)Desca_1601

Vitamin B12 dependent methionine synthase activation region		Desca_1601Operon

DOOR ID: 859651		Desca_1598,
Desca_1599,
Desca_1600,
Desca_1601		 View Structure
23 1805800-1805967 (+)ykoK1806150-1807119 (+)Desca_1682

Magnesium transport protein CorA		Desca_1682Single gene

DOOR ID: 3148336		Desca_1682 View Structure
24 1889887-1889985 (-)ykkC-yxkD1888337-1889714 (-)Desca_1763

Xanthine/uracil/vitamin C permease		Desca_1763Operon

DOOR ID: 859685		Desca_1760,
Desca_1761,
Desca_1762,
Desca_1763		 View Structure
25 1889972-1890073 (-)purine1888337-1889714 (-)Desca_1763

Xanthine/uracil/vitamin C permease		Desca_1763Operon

DOOR ID: 859685		Desca_1760,
Desca_1761,
Desca_1762,
Desca_1763		 View Structure
26 2264007-2264118 (+)SAM2264203-2265229 (+)Desca_2141

Methionine import ATP-binding protein MetN 		Desca_2141Operon

DOOR ID: 859769		Desca_2141,
Desca_2142,
Desca_2143		 View Structure
27 2301268-2301344 (-)c-di-GMP-I2299954-2301142 (-)Desca_2181

Type II secretion system F domain protein		Desca_2181single gene

DOOR ID: 3148488		Desca_2181 View Structure
28 2400176-2400284 (-)glycine2398883-2399978 (-)Desca_2283

Aminomethyltransferase (0) (Glycine cleavage system T protein)		Desca_2283Operon

DOOR ID: 859793		Desca_2280,
Desca_2281,
Desca_2282,
Desca_2283		 View Structure
29 2704635-2704732 (-)SAM2703345-2704536 (-)Desca_2568

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		Desca_2568Single gene

DOOR ID: 3148637		Desca_2568 View Structure
30 2837853-2837937 (-)c-di-GMP-I2836383-2837745 (-)Desca_2695

ATP-binding region ATPase domain protein		Desca_2695single gene

DOOR ID: 3148696		Desca_2695 View Structure
31 2839072-2839167 (+)glycine2839378-2840776 (+)Desca_2697

Amino acid carrier protein		Desca_2697Single gene

DOOR ID: 3148698		Desca_2697 View Structure