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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
141530-141696
(+)
FMN
141816-142752 (+)
Mar181_0129
Mar181_0129
Single gene
DOOR ID:
3141888
Mar181_0129
View Structure
2
439226-439266
(-)
SAM-SAH
437074-439216 (-)
Mar181_0396
Methyl-accepting chemotaxis sensory transducer
Mar181_0396
Single gene
DOOR ID:
3142000
Mar181_0396
View Structure
3
868025-868140
(+)
TPP
868197-869211 (+)
Mar181_0781
Thiamine ABC transporter; periplasmic binding protein
Mar181_0781
Operon
DOOR ID:
856182
Mar181_0781,
Mar181_0782,
Mar181_0783,
Mar181_0784
View Structure
4
2130626-2130730
(-)
TPP
2128397-2130440 (-)
Mar181_1953
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Mar181_1953
Operon
DOOR ID:
856416
Mar181_1949,
Mar181_1950,
Mar181_1951,
Mar181_1952,
Mar181_1953
View Structure
5
2703380-2703605
(-)
cobalamin
2702639-2703320 (-)
Mar181_2462
Mar181_2462
Single gene
DOOR ID:
3142767
Mar181_2462
View Structure
6
2848406-2848553
(+)
FMN
2848677-2849169 (+)
Mar181_2570
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
Mar181_2570
Single gene
DOOR ID:
3142797
Mar181_2570
View Structure
7
3650363-3650472
(+)
ykkC-yxkD
3650534-3651587 (+)
Mar181_3314
ABC transporter periplasmic binding protein; urea carboxylase region
Mar181_3314
Operon
DOOR ID:
856689
Mar181_3314,
Mar181_3315,
Mar181_3316,
Mar181_3317,
Mar181_3318
View Structure
8
3654693-3654737
(+)
mini-ykkC
3654750-3658377 (+)
Mar181_3319
Mar181_3319
Operon
DOOR ID:
856690
Mar181_3319,
Mar181_3320
View Structure
9
3745457-3745532
(+)
sam-alpha
3745609-3746773 (+)
Mar181_3404
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Mar181_3404
Operon
DOOR ID:
856706
Mar181_3404,
Mar181_3405
View Structure
10
3765215-3765321
(+)
yybP-ykoY
3765407-3765974 (+)
Mar181_3421
Mar181_3421
Operon
DOOR ID:
856711
Mar181_3421,
Mar181_3422,
Mar181_3423
View Structure
Genome:
Marinomonas posidonica IVIA-Po-181
(
NC_015559.1
);
Phylum:
Gammaproteobacteria
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periplasmic binding protein";i:13;s:11:"Mar181_0781";i:14;s:6:"Operon";i:15;s:6:"856182";i:16;s:47:"Mar181_0781;Mar181_0782;Mar181_0783;Mar181_0784";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015559.1";i:2;s:35:"Marinomonas posidonica IVIA-Po-181 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2130626-2130730";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2128397-2130440";i:10;s:1:"-";i:11;s:11:"Mar181_1953";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"Mar181_1953";i:14;s:6:"Operon";i:15;s:6:"856416";i:16;s:59:"Mar181_1949;Mar181_1950;Mar181_1951;Mar181_1952;Mar181_1953";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015559.1";i:2;s:35:"Marinomonas posidonica IVIA-Po-181 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2703380-2703605";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2702639-2703320";i:10;s:1:"-";i:11;s:11:"Mar181_2462";i:12;s:0:"";i:13;s:11:"Mar181_2462";i:14;s:11:"Single gene";i:15;s:7:"3142767";i:16;s:11:"Mar181_2462";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015559.1";i:2;s:35:"Marinomonas posidonica IVIA-Po-181 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2848406-2848553";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2848677-2849169";i:10;s:1:"+";i:11;s:11:"Mar181_2570";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:11:"Mar181_2570";i:14;s:11:"Single gene";i:15;s:7:"3142797";i:16;s:11:"Mar181_2570";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015559.1";i:2;s:35:"Marinomonas posidonica IVIA-Po-181 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3650363-3650472";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"3650534-3651587";i:10;s:1:"+";i:11;s:11:"Mar181_3314";i:12;s:68:"ABC transporter periplasmic binding protein; urea carboxylase region";i:13;s:11:"Mar181_3314";i:14;s:6:"Operon";i:15;s:6:"856689";i:16;s:59:"Mar181_3314;Mar181_3315;Mar181_3316;Mar181_3317;Mar181_3318";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015559.1";i:2;s:35:"Marinomonas posidonica IVIA-Po-181 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3654693-3654737";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3654750-3658377";i:10;s:1:"+";i:11;s:11:"Mar181_3319";i:12;s:0:"";i:13;s:11:"Mar181_3319";i:14;s:6:"Operon";i:15;s:6:"856690";i:16;s:23:"Mar181_3319;Mar181_3320";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015559.1";i:2;s:35:"Marinomonas posidonica IVIA-Po-181 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3745457-3745532";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"3745609-3746773";i:10;s:1:"+";i:11;s:11:"Mar181_3404";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:11:"Mar181_3404";i:14;s:6:"Operon";i:15;s:6:"856706";i:16;s:23:"Mar181_3404;Mar181_3405";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015559.1";i:2;s:35:"Marinomonas posidonica IVIA-Po-181 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3765215-3765321";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3765407-3765974";i:10;s:1:"+";i:11;s:11:"Mar181_3421";i:12;s:0:"";i:13;s:11:"Mar181_3421";i:14;s:6:"Operon";i:15;s:6:"856711";i:16;s:35:"Mar181_3421;Mar181_3422;Mar181_3423";i:17;s:0:"";i:18;s:15:"View Structure ";}}