About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
60049-60253
(-)
cobalamin
58597-59953 (-)
Psefu_0056
Precorrin-3B synthase
Psefu_0056
Operon
DOOR ID:
854723
Psefu_0054,
Psefu_0055,
Psefu_0056
View Structure
2
95383-95443
(+)
SAH
95752-96769 (-)
Psefu_0088
ADP-ribosylation/Crystallin J1
Psefu_0088
Operon
DOOR ID:
854728
Psefu_0086,
Psefu_0087,
Psefu_0088,
Psefu_0089
View Structure
3
163734-163827
(+)
SAH
163987-165289 (-)
Psefu_0142
Mn2+/Fe2+ transporter
Psefu_0142
Single gene
DOOR ID:
3139483
Psefu_0142
View Structure
4
382227-382310
(-)
SAH
380751-382146 (-)
Psefu_0338
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Psefu_0338
Operon
DOOR ID:
854778
Psefu_0337,
Psefu_0338
View Structure
5
751345-751501
(+)
FMN
751593-752055 (+)
Psefu_0686
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
Psefu_0686
Operon
DOOR ID:
854847
Psefu_0686,
Psefu_0687,
Psefu_0688,
Psefu_0689,
Psefu_0690,
Psefu_0691,
Psefu_0692,
Psefu_0693,
Psefu_0694
View Structure
6
1499431-1499520
(+)
glycine
1499641-1500262 (+)
Psefu_1382
Psefu_1382
Single gene
DOOR ID:
3139974
Psefu_1382
View Structure
7
1499521-1499620
(+)
glycine
1499641-1500262 (+)
Psefu_1382
Psefu_1382
Single gene
DOOR ID:
3139974
Psefu_1382
View Structure
8
2011266-2011495
(+)
cobalamin
2011619-2012255 (+)
Psefu_1874
Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)
Psefu_1874
Operon
DOOR ID:
855082
Psefu_1874,
Psefu_1875,
Psefu_1876,
Psefu_1877,
Psefu_1878,
Psefu_1879,
Psefu_1880,
Psefu_1881,
Psefu_1882,
Psefu_1883
View Structure
9
2372253-2372419
(+)
yybP-ykoY
2372423-2372987 (+)
Psefu_2214
Putative manganese efflux pump MntP
Psefu_2214
Single gene
DOOR ID:
3140299
Psefu_2214
View Structure
10
2375885-2376081
(+)
cobalamin
2376250-2377258 (+)
Psefu_2216
Periplasmic binding protein
Psefu_2216
Operon
DOOR ID:
855144
Psefu_2216,
Psefu_2217,
Psefu_2218,
Psefu_2219,
Psefu_2220
View Structure
11
3370879-3370925
(+)
mini-ykkC
3370945-3371263 (+)
Psefu_3149
Psefu_3149
Single gene
DOOR ID:
3140662
Psefu_3149
View Structure
12
3515726-3515830
(+)
ykkC-yxkD
3515893-3516961 (+)
Psefu_3268
ABC transporter periplasmic binding protein; urea carboxylase region
Psefu_3268
Operon
DOOR ID:
855354
Psefu_3268,
Psefu_3269,
Psefu_3270,
Psefu_3271,
Psefu_3272,
Psefu_3273,
Psefu_3274,
Psefu_3275,
Psefu_3276,
Psefu_3277
View Structure
13
3520168-3520215
(+)
mini-ykkC
3520235-3523910 (+)
Psefu_3274
Psefu_3274
Operon
DOOR ID:
855354
Psefu_3268,
Psefu_3269,
Psefu_3270,
Psefu_3271,
Psefu_3272,
Psefu_3273,
Psefu_3274,
Psefu_3275,
Psefu_3276,
Psefu_3277
View Structure
14
3647527-3647670
(+)
yybP-ykoY
3647758-3648349 (+)
Psefu_3389
Psefu_3389
Single gene
DOOR ID:
3140747
Psefu_3389
View Structure
15
4537639-4537745
(-)
TPP
4535441-4537328 (-)
Psefu_4159
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Psefu_4159
Single gene
DOOR ID:
3141009
Psefu_4159
View Structure
16
4679813-4679923
(+)
glycine
4679927-4680842 (-)
Psefu_4289
SdiA-regulated domain protein
Psefu_4289
Single gene
DOOR ID:
3141058
Psefu_4289
View Structure
17
4847469-4847652
(-)
cobalamin
4846321-4847371 (-)
Psefu_4438
Cobalamin biosynthesis protein CobW
Psefu_4438
Operon
DOOR ID:
855607
Psefu_4436,
Psefu_4437,
Psefu_4438
View Structure
18
4847724-4847926
(+)
cobalamin
4848020-4848206 (+)
Psefu_4439
Cobalt transporter; subunit CbtB
Psefu_4439
Operon
DOOR ID:
855608
Psefu_4439,
Psefu_4440,
Psefu_4441
View Structure
Genome:
Pseudomonas fulva 12-X
(
NC_015556.1
);
Phylum:
Gammaproteobacteria
a:19:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"60049-60253";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:11:"58597-59953";i:10;s:1:"-";i:11;s:10:"Psefu_0056";i:12;s:22:"Precorrin-3B synthase ";i:13;s:10:"Psefu_0056";i:14;s:6:"Operon";i:15;s:6:"854723";i:16;s:32:"Psefu_0054;Psefu_0055;Psefu_0056";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"95383-95443";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:11:"95752-96769";i:10;s:1:"-";i:11;s:10:"Psefu_0088";i:12;s:30:"ADP-ribosylation/Crystallin J1";i:13;s:10:"Psefu_0088";i:14;s:6:"Operon";i:15;s:6:"854728";i:16;s:43:"Psefu_0086;Psefu_0087;Psefu_0088;Psefu_0089";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"163734-163827";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"163987-165289";i:10;s:1:"-";i:11;s:10:"Psefu_0142";i:12;s:21:"Mn2+/Fe2+ transporter";i:13;s:10:"Psefu_0142";i:14;s:11:"Single gene";i:15;s:7:"3139483";i:16;s:10:"Psefu_0142";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"382227-382310";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"380751-382146";i:10;s:1:"-";i:11;s:10:"Psefu_0338";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:10:"Psefu_0338";i:14;s:6:"Operon";i:15;s:6:"854778";i:16;s:21:"Psefu_0337;Psefu_0338";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"751345-751501";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"751593-752055";i:10;s:1:"+";i:11;s:10:"Psefu_0686";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:10:"Psefu_0686";i:14;s:6:"Operon";i:15;s:6:"854847";i:16;s:98:"Psefu_0686;Psefu_0687;Psefu_0688;Psefu_0689;Psefu_0690;Psefu_0691;Psefu_0692;Psefu_0693;Psefu_0694";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1499431-1499520";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"1499641-1500262";i:10;s:1:"+";i:11;s:10:"Psefu_1382";i:12;s:0:"";i:13;s:10:"Psefu_1382";i:14;s:11:"Single gene";i:15;s:7:"3139974";i:16;s:10:"Psefu_1382";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1499521-1499620";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"1499641-1500262";i:10;s:1:"+";i:11;s:10:"Psefu_1382";i:12;s:0:"";i:13;s:10:"Psefu_1382";i:14;s:11:"Single gene";i:15;s:7:"3139974";i:16;s:10:"Psefu_1382";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2011266-2011495";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2011619-2012255";i:10;s:1:"+";i:11;s:10:"Psefu_1874";i:12;s:120:"Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)";i:13;s:10:"Psefu_1874";i:14;s:6:"Operon";i:15;s:6:"855082";i:16;s:109:"Psefu_1874;Psefu_1875;Psefu_1876;Psefu_1877;Psefu_1878;Psefu_1879;Psefu_1880;Psefu_1881;Psefu_1882;Psefu_1883";i:17;s:108:"cobalamin biosynthetic process [GO:0009236]; porphyrin-containing compound biosynthetic process [GO:0006779]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2372253-2372419";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2372423-2372987";i:10;s:1:"+";i:11;s:10:"Psefu_2214";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:10:"Psefu_2214";i:14;s:11:"Single gene";i:15;s:7:"3140299";i:16;s:10:"Psefu_2214";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2375885-2376081";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2376250-2377258";i:10;s:1:"+";i:11;s:10:"Psefu_2216";i:12;s:27:"Periplasmic binding protein";i:13;s:10:"Psefu_2216";i:14;s:6:"Operon";i:15;s:6:"855144";i:16;s:54:"Psefu_2216;Psefu_2217;Psefu_2218;Psefu_2219;Psefu_2220";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3370879-3370925";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3370945-3371263";i:10;s:1:"+";i:11;s:10:"Psefu_3149";i:12;s:0:"";i:13;s:10:"Psefu_3149";i:14;s:11:"Single gene";i:15;s:7:"3140662";i:16;s:10:"Psefu_3149";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3515726-3515830";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"3515893-3516961";i:10;s:1:"+";i:11;s:10:"Psefu_3268";i:12;s:68:"ABC transporter periplasmic binding protein; urea carboxylase region";i:13;s:10:"Psefu_3268";i:14;s:6:"Operon";i:15;s:6:"855354";i:16;s:109:"Psefu_3268;Psefu_3269;Psefu_3270;Psefu_3271;Psefu_3272;Psefu_3273;Psefu_3274;Psefu_3275;Psefu_3276;Psefu_3277";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3520168-3520215";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3520235-3523910";i:10;s:1:"+";i:11;s:10:"Psefu_3274";i:12;s:0:"";i:13;s:10:"Psefu_3274";i:14;s:6:"Operon";i:15;s:6:"855354";i:16;s:109:"Psefu_3268;Psefu_3269;Psefu_3270;Psefu_3271;Psefu_3272;Psefu_3273;Psefu_3274;Psefu_3275;Psefu_3276;Psefu_3277";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3647527-3647670";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3647758-3648349";i:10;s:1:"+";i:11;s:10:"Psefu_3389";i:12;s:0:"";i:13;s:10:"Psefu_3389";i:14;s:11:"Single gene";i:15;s:7:"3140747";i:16;s:10:"Psefu_3389";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4537639-4537745";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4535441-4537328";i:10;s:1:"-";i:11;s:10:"Psefu_4159";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Psefu_4159";i:14;s:11:"Single gene";i:15;s:7:"3141009";i:16;s:10:"Psefu_4159";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4679813-4679923";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"4679927-4680842";i:10;s:1:"-";i:11;s:10:"Psefu_4289";i:12;s:29:"SdiA-regulated domain protein";i:13;s:10:"Psefu_4289";i:14;s:11:"Single gene";i:15;s:7:"3141058";i:16;s:10:"Psefu_4289";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4847469-4847652";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4846321-4847371";i:10;s:1:"-";i:11;s:10:"Psefu_4438";i:12;s:35:"Cobalamin biosynthesis protein CobW";i:13;s:10:"Psefu_4438";i:14;s:6:"Operon";i:15;s:6:"855607";i:16;s:32:"Psefu_4436;Psefu_4437;Psefu_4438";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_015556.1";i:2;s:23:"Pseudomonas fulva 12-X ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4847724-4847926";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4848020-4848206";i:10;s:1:"+";i:11;s:10:"Psefu_4439";i:12;s:32:"Cobalt transporter; subunit CbtB";i:13;s:10:"Psefu_4439";i:14;s:6:"Operon";i:15;s:6:"855608";i:16;s:32:"Psefu_4439;Psefu_4440;Psefu_4441";i:17;s:0:"";i:18;s:15:"View Structure ";}}