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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
162380-162507
(+)
FMN
162582-163155 (+)
TepRe1_0147
TepRe1_0147
Single gene
DOOR ID:
3135582
TepRe1_0147
View Structure
2
372560-372734
(+)
lysine
372834-373743 (+)
TepRe1_0343
TepRe1_0343
Single gene
DOOR ID:
3135651
TepRe1_0343
View Structure
3
375658-375749
(+)
glycine
375911-376976 (+)
TepRe1_0345
TepRe1_0345
Operon
DOOR ID:
852478
TepRe1_0345,
TepRe1_0346,
TepRe1_0347,
TepRe1_0348
View Structure
4
392846-393013
(+)
ydaO-yuaA
393109-394243 (+)
TepRe1_0361
TepRe1_0361
Operon
DOOR ID:
852481
TepRe1_0361,
TepRe1_0362
View Structure
5
423289-423384
(-)
ykkC-yxkD
421923-423093 (-)
TepRe1_0389
TepRe1_0389
Operon
DOOR ID:
852486
TepRe1_0385,
TepRe1_0386,
TepRe1_0387,
TepRe1_0388,
TepRe1_0389
View Structure
6
484780-484959
(+)
cobalamin
485167-485623 (+)
TepRe1_0448
TepRe1_0448
Operon
DOOR ID:
852499
TepRe1_0448,
TepRe1_0449,
TepRe1_0450,
TepRe1_0451,
TepRe1_0452,
TepRe1_0453,
TepRe1_0454,
TepRe1_0455,
TepRe1_0456,
TepRe1_0457,
TepRe1_0458,
TepRe1_0459,
TepRe1_0460,
TepRe1_0461,
TepRe1_0462,
TepRe1_0463,
TepRe1_0464,
TepRe1_0465,
TepRe1_0466
View Structure
7
516575-516678
(+)
TPP
516768-517404 (+)
TepRe1_0479
TepRe1_0479
Single gene
DOOR ID:
3135682
TepRe1_0479
View Structure
8
759883-760051
(+)
ykoK
760227-761625 (+)
TepRe1_0700
TepRe1_0700
Operon
DOOR ID:
852545
TepRe1_0700,
TepRe1_0701
View Structure
9
778587-778760
(-)
cobalamin
777977-778475 (-)
TepRe1_0716
TepRe1_0716
Single gene
DOOR ID:
3135748
TepRe1_0716
View Structure
10
799217-799283
(+)
glutamine
800891-801878 (+)
TepRe1_0738
TepRe1_0738
Single gene
DOOR ID:
3135754
TepRe1_0738
View Structure
11
851524-851619
(+)
THF
851702-852227 (+)
TepRe1_0778
TepRe1_0778
Single gene
DOOR ID:
3135770
TepRe1_0778
View Structure
12
939796-939896
(-)
c-di-GMP-I
937610-939659 (-)
TepRe1_0866
TepRe1_0866
single gene
DOOR ID:
3135794
TepRe1_0866
View Structure
13
1063269-1063437
(+)
cobalamin
1063542-1064496 (+)
TepRe1_0999
TepRe1_0999
Operon
DOOR ID:
852601
TepRe1_0999,
TepRe1_1000,
TepRe1_1001,
TepRe1_1002,
TepRe1_1003,
TepRe1_1004
View Structure
14
1131103-1131287
(-)
cobalamin
1129923-1130979 (-)
TepRe1_1084
TepRe1_1084
Single gene
DOOR ID:
3135866
TepRe1_1084
View Structure
15
1412826-1413005
(-)
lysine
1411405-1412740 (-)
TepRe1_1367
TepRe1_1367
Single gene
DOOR ID:
3135912
TepRe1_1367
View Structure
16
1731494-1731700
(-)
cobalamin
1730867-1731398 (-)
TepRe1_1680
TepRe1_1680
Single gene
DOOR ID:
3135981
TepRe1_1680
View Structure
17
1914743-1914874
(-)
FMN
1913577-1914663 (-)
TepRe1_1851
TepRe1_1851
Operon
DOOR ID:
852764
TepRe1_1848,
TepRe1_1849,
TepRe1_1850,
TepRe1_1851
View Structure
18
2023735-2023916
(-)
cobalamin
2021796-2023632 (-)
TepRe1_1947
TepRe1_1947
Operon
DOOR ID:
852786
TepRe1_1946,
TepRe1_1947
View Structure
19
2045606-2045792
(-)
lysine
2044615-2045470 (-)
TepRe1_1967
TepRe1_1967
Single gene
DOOR ID:
3136048
TepRe1_1967
View Structure
20
2710610-2710727
(+)
SAM
2710835-2712017 (+)
TepRe1_2592
TepRe1_2592
Single gene
DOOR ID:
3136231
TepRe1_2592
View Structure
Genome:
Tepidanaerobacter sp. Re1
(
NC_015519.1
);
Phylum:
Firmicutes
a:21:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"162380-162507";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"162582-163155";i:10;s:1:"+";i:11;s:11:"TepRe1_0147";i:12;s:0:"";i:13;s:11:"TepRe1_0147";i:14;s:11:"Single gene";i:15;s:7:"3135582";i:16;s:11:"TepRe1_0147";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"372560-372734";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"372834-373743";i:10;s:1:"+";i:11;s:11:"TepRe1_0343";i:12;s:0:"";i:13;s:11:"TepRe1_0343";i:14;s:11:"Single gene";i:15;s:7:"3135651";i:16;s:11:"TepRe1_0343";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"375658-375749";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"375911-376976";i:10;s:1:"+";i:11;s:11:"TepRe1_0345";i:12;s:0:"";i:13;s:11:"TepRe1_0345";i:14;s:6:"Operon";i:15;s:6:"852478";i:16;s:47:"TepRe1_0345;TepRe1_0346;TepRe1_0347;TepRe1_0348";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"392846-393013";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"393109-394243";i:10;s:1:"+";i:11;s:11:"TepRe1_0361";i:12;s:0:"";i:13;s:11:"TepRe1_0361";i:14;s:6:"Operon";i:15;s:6:"852481";i:16;s:23:"TepRe1_0361;TepRe1_0362";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"423289-423384";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:13:"421923-423093";i:10;s:1:"-";i:11;s:11:"TepRe1_0389";i:12;s:0:"";i:13;s:11:"TepRe1_0389";i:14;s:6:"Operon";i:15;s:6:"852486";i:16;s:59:"TepRe1_0385;TepRe1_0386;TepRe1_0387;TepRe1_0388;TepRe1_0389";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"484780-484959";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"485167-485623";i:10;s:1:"+";i:11;s:11:"TepRe1_0448";i:12;s:0:"";i:13;s:11:"TepRe1_0448";i:14;s:6:"Operon";i:15;s:6:"852499";i:16;s:227:"TepRe1_0448;TepRe1_0449;TepRe1_0450;TepRe1_0451;TepRe1_0452;TepRe1_0453;TepRe1_0454;TepRe1_0455;TepRe1_0456;TepRe1_0457;TepRe1_0458;TepRe1_0459;TepRe1_0460;TepRe1_0461;TepRe1_0462;TepRe1_0463;TepRe1_0464;TepRe1_0465;TepRe1_0466";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"516575-516678";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"516768-517404";i:10;s:1:"+";i:11;s:11:"TepRe1_0479";i:12;s:0:"";i:13;s:11:"TepRe1_0479";i:14;s:11:"Single gene";i:15;s:7:"3135682";i:16;s:11:"TepRe1_0479";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"759883-760051";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"760227-761625";i:10;s:1:"+";i:11;s:11:"TepRe1_0700";i:12;s:0:"";i:13;s:11:"TepRe1_0700";i:14;s:6:"Operon";i:15;s:6:"852545";i:16;s:23:"TepRe1_0700;TepRe1_0701";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"778587-778760";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"777977-778475";i:10;s:1:"-";i:11;s:11:"TepRe1_0716";i:12;s:0:"";i:13;s:11:"TepRe1_0716";i:14;s:11:"Single gene";i:15;s:7:"3135748";i:16;s:11:"TepRe1_0716";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"799217-799283";i:6;s:1:"+";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:13:"800891-801878";i:10;s:1:"+";i:11;s:11:"TepRe1_0738";i:12;s:0:"";i:13;s:11:"TepRe1_0738";i:14;s:11:"Single gene";i:15;s:7:"3135754";i:16;s:11:"TepRe1_0738";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"851524-851619";i:6;s:1:"+";i:7;s:3:"THF";i:8;s:0:"";i:9;s:13:"851702-852227";i:10;s:1:"+";i:11;s:11:"TepRe1_0778";i:12;s:0:"";i:13;s:11:"TepRe1_0778";i:14;s:11:"Single gene";i:15;s:7:"3135770";i:16;s:11:"TepRe1_0778";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"939796-939896";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"937610-939659";i:10;s:1:"-";i:11;s:11:"TepRe1_0866";i:12;s:0:"";i:13;s:11:"TepRe1_0866";i:14;s:11:"single gene";i:15;s:7:"3135794";i:16;s:11:"TepRe1_0866";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1063269-1063437";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1063542-1064496";i:10;s:1:"+";i:11;s:11:"TepRe1_0999";i:12;s:0:"";i:13;s:11:"TepRe1_0999";i:14;s:6:"Operon";i:15;s:6:"852601";i:16;s:71:"TepRe1_0999;TepRe1_1000;TepRe1_1001;TepRe1_1002;TepRe1_1003;TepRe1_1004";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1131103-1131287";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1129923-1130979";i:10;s:1:"-";i:11;s:11:"TepRe1_1084";i:12;s:0:"";i:13;s:11:"TepRe1_1084";i:14;s:11:"Single gene";i:15;s:7:"3135866";i:16;s:11:"TepRe1_1084";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1412826-1413005";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1411405-1412740";i:10;s:1:"-";i:11;s:11:"TepRe1_1367";i:12;s:0:"";i:13;s:11:"TepRe1_1367";i:14;s:11:"Single gene";i:15;s:7:"3135912";i:16;s:11:"TepRe1_1367";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1731494-1731700";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1730867-1731398";i:10;s:1:"-";i:11;s:11:"TepRe1_1680";i:12;s:0:"";i:13;s:11:"TepRe1_1680";i:14;s:11:"Single gene";i:15;s:7:"3135981";i:16;s:11:"TepRe1_1680";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1914743-1914874";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1913577-1914663";i:10;s:1:"-";i:11;s:11:"TepRe1_1851";i:12;s:0:"";i:13;s:11:"TepRe1_1851";i:14;s:6:"Operon";i:15;s:6:"852764";i:16;s:47:"TepRe1_1848;TepRe1_1849;TepRe1_1850;TepRe1_1851";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2023735-2023916";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2021796-2023632";i:10;s:1:"-";i:11;s:11:"TepRe1_1947";i:12;s:0:"";i:13;s:11:"TepRe1_1947";i:14;s:6:"Operon";i:15;s:6:"852786";i:16;s:23:"TepRe1_1946;TepRe1_1947";i:17;s:0:"";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2045606-2045792";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2044615-2045470";i:10;s:1:"-";i:11;s:11:"TepRe1_1967";i:12;s:0:"";i:13;s:11:"TepRe1_1967";i:14;s:11:"Single gene";i:15;s:7:"3136048";i:16;s:11:"TepRe1_1967";i:17;s:0:"";i:18;s:15:"View Structure ";}i:20;a:19:{i:0;i:20;i:1;s:11:"NC_015519.1";i:2;s:26:"Tepidanaerobacter sp. Re1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2710610-2710727";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2710835-2712017";i:10;s:1:"+";i:11;s:11:"TepRe1_2592";i:12;s:0:"";i:13;s:11:"TepRe1_2592";i:14;s:11:"Single gene";i:15;s:7:"3136231";i:16;s:11:"TepRe1_2592";i:17;s:0:"";i:18;s:15:"View Structure ";}}