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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
243861-243935
(+)
c-di-GMP-I
243950-244100 (+)
Celf_0219
Uncharacterized protein
Celf_0219
single gene
DOOR ID:
3132694
Celf_0219
View Structure
2
375173-375302
(+)
TPP
375388-376474 (+)
Celf_0334
ABC transporter; periplasmic binding protein; thiB subfamily
Celf_0334
Single gene
DOOR ID:
3132741
Celf_0334
View Structure
3
808900-809096
(+)
ydaO-yuaA
809098-809857 (+)
Celf_0738
NLP/P60 protein
Celf_0738
Single gene
DOOR ID:
3132865
Celf_0738
View Structure
4
1214388-1214476
(+)
ZMP-ZTP
1214510-1216118 (+)
Celf_1118
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
Celf_1118
Single gene
DOOR ID:
3132998
Celf_1118
View Structure
5
1235986-1236076
(+)
ZMP-ZTP
1236174-1237464 (+)
Celf_1135
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Celf_1135
Operon
DOOR ID:
850925
Celf_1135,
Celf_1136
View Structure
6
1298083-1298190
(+)
SAM-IV
1298494-1299646 (+)
Celf_1189
Luciferase-like; subgroup
Celf_1189
Operon
DOOR ID:
850937
Celf_1189,
Celf_1190,
Celf_1191,
Celf_1192,
Celf_1193,
Celf_1194
View Structure
7
1321311-1321425
(+)
SAM-IV
1321627-1321720 (+)
Celf_1209
Celf_1209
Single gene
DOOR ID:
3133031
Celf_1209
View Structure
8
1813385-1813491
(+)
TPP
1813556-1814381 (+)
Celf_1655
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Celf_1655
Operon
DOOR ID:
851041
Celf_1655,
Celf_1656,
Celf_1657
View Structure
9
2172603-2172735
(-)
FMN
2171329-2172517 (-)
Celf_1965
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Celf_1965
Operon
DOOR ID:
851107
Celf_1961,
Celf_1962,
Celf_1963,
Celf_1964,
Celf_1965
View Structure
10
2279684-2279859
(+)
ydaO-yuaA
2279860-2280652 (+)
Celf_2060
NLP/P60 protein
Celf_2060
Single gene
DOOR ID:
3133268
Celf_2060
View Structure
11
2316135-2316209
(+)
c-di-GMP-I
2316224-2318174 (+)
Celf_2091
PKD domain containing protein
Celf_2091
operon
DOOR ID:
851136
Celf_2091,
Celf_2092
View Structure
12
2514363-2514437
(-)
c-di-GMP-I
2514121-2514346 (-)
Celf_2275
DNA binding domain protein; excisionase family
Celf_2275
single gene
DOOR ID:
3133345
Celf_2275
View Structure
13
2640294-2640416
(+)
TPP
2640547-2641216 (+)
Celf_2381
YKOF domain-containing protein
Celf_2381
Operon
DOOR ID:
851199
Celf_2381,
Celf_2382,
Celf_2383,
Celf_2384
View Structure
14
2678133-2678242
(+)
SAM-IV
2678317-2679418 (+)
Celf_2417
Binding-protein-dependent transport systems inner membrane component
Celf_2417
Operon
DOOR ID:
851205
Celf_2417,
Celf_2418,
Celf_2419
View Structure
15
3584960-3585074
(-)
SAM-IV
3583504-3584920 (-)
Celf_3203
Cysteine desulfurase
Celf_3203
Single gene
DOOR ID:
3133635
Celf_3203
View Structure
16
3585194-3585290
(+)
SAM
3585295-3585709 (+)
Celf_3204
Rhodanese domain protein
Celf_3204
Operon
DOOR ID:
851390
Celf_3204,
Celf_3205
View Structure
17
3869551-3869660
(+)
SAM-IV
3869675-3870236 (+)
Celf_3462
NADPH-dependent FMN reductase
Celf_3462
Operon
DOOR ID:
851445
Celf_3462,
Celf_3463,
Celf_3464,
Celf_3465,
Celf_3466
View Structure
18
4161783-4161878
(+)
SAM
4161954-4163046 (+)
Celf_3720
Methylenetetrahydrofolate reductase (0)
Celf_3720
Operon
DOOR ID:
851493
Celf_3720,
Celf_3721,
Celf_3722
View Structure
19
4173238-4173329
(-)
glycine
4170007-4173049 (-)
Celf_3728
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Celf_3728
Operon
DOOR ID:
851494
Celf_3726,
Celf_3727,
Celf_3728
View Structure
Genome:
Cellulomonas fimi ATCC 484
(
NC_015514.1
);
Phylum:
Actinobacteria
a:20:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"243861-243935";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"243950-244100";i:10;s:1:"+";i:11;s:9:"Celf_0219";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Celf_0219";i:14;s:11:"single gene";i:15;s:7:"3132694";i:16;s:9:"Celf_0219";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"375173-375302";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"375388-376474";i:10;s:1:"+";i:11;s:9:"Celf_0334";i:12;s:60:"ABC transporter; periplasmic binding protein; thiB subfamily";i:13;s:9:"Celf_0334";i:14;s:11:"Single gene";i:15;s:7:"3132741";i:16;s:9:"Celf_0334";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"808900-809096";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"809098-809857";i:10;s:1:"+";i:11;s:9:"Celf_0738";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Celf_0738";i:14;s:11:"Single gene";i:15;s:7:"3132865";i:16;s:9:"Celf_0738";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1214388-1214476";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"1214510-1216118";i:10;s:1:"+";i:11;s:9:"Celf_1118";i:12;s:155:"Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]";i:13;s:9:"Celf_1118";i:14;s:11:"Single gene";i:15;s:7:"3132998";i:16;s:9:"Celf_1118";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1235986-1236076";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"1236174-1237464";i:10;s:1:"+";i:11;s:9:"Celf_1135";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:9:"Celf_1135";i:14;s:6:"Operon";i:15;s:6:"850925";i:16;s:19:"Celf_1135;Celf_1136";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1298083-1298190";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1298494-1299646";i:10;s:1:"+";i:11;s:9:"Celf_1189";i:12;s:25:"Luciferase-like; subgroup";i:13;s:9:"Celf_1189";i:14;s:6:"Operon";i:15;s:6:"850937";i:16;s:59:"Celf_1189;Celf_1190;Celf_1191;Celf_1192;Celf_1193;Celf_1194";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1321311-1321425";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1321627-1321720";i:10;s:1:"+";i:11;s:9:"Celf_1209";i:12;s:0:"";i:13;s:9:"Celf_1209";i:14;s:11:"Single gene";i:15;s:7:"3133031";i:16;s:9:"Celf_1209";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1813385-1813491";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1813556-1814381";i:10;s:1:"+";i:11;s:9:"Celf_1655";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"Celf_1655";i:14;s:6:"Operon";i:15;s:6:"851041";i:16;s:29:"Celf_1655;Celf_1656;Celf_1657";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2172603-2172735";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2171329-2172517";i:10;s:1:"-";i:11;s:9:"Celf_1965";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"Celf_1965";i:14;s:6:"Operon";i:15;s:6:"851107";i:16;s:49:"Celf_1961;Celf_1962;Celf_1963;Celf_1964;Celf_1965";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2279684-2279859";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2279860-2280652";i:10;s:1:"+";i:11;s:9:"Celf_2060";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Celf_2060";i:14;s:11:"Single gene";i:15;s:7:"3133268";i:16;s:9:"Celf_2060";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2316135-2316209";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2316224-2318174";i:10;s:1:"+";i:11;s:9:"Celf_2091";i:12;s:29:"PKD domain containing protein";i:13;s:9:"Celf_2091";i:14;s:6:"operon";i:15;s:6:"851136";i:16;s:19:"Celf_2091;Celf_2092";i:17;s:49:"substituted mannan metabolic process [GO:0006080]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2514363-2514437";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2514121-2514346";i:10;s:1:"-";i:11;s:9:"Celf_2275";i:12;s:46:"DNA binding domain protein; excisionase family";i:13;s:9:"Celf_2275";i:14;s:11:"single gene";i:15;s:7:"3133345";i:16;s:9:"Celf_2275";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2640294-2640416";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2640547-2641216";i:10;s:1:"+";i:11;s:9:"Celf_2381";i:12;s:30:"YKOF domain-containing protein";i:13;s:9:"Celf_2381";i:14;s:6:"Operon";i:15;s:6:"851199";i:16;s:39:"Celf_2381;Celf_2382;Celf_2383;Celf_2384";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2678133-2678242";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"2678317-2679418";i:10;s:1:"+";i:11;s:9:"Celf_2417";i:12;s:68:"Binding-protein-dependent transport systems inner membrane component";i:13;s:9:"Celf_2417";i:14;s:6:"Operon";i:15;s:6:"851205";i:16;s:29:"Celf_2417;Celf_2418;Celf_2419";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3584960-3585074";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3583504-3584920";i:10;s:1:"-";i:11;s:9:"Celf_3203";i:12;s:21:"Cysteine desulfurase ";i:13;s:9:"Celf_3203";i:14;s:11:"Single gene";i:15;s:7:"3133635";i:16;s:9:"Celf_3203";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3585194-3585290";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3585295-3585709";i:10;s:1:"+";i:11;s:9:"Celf_3204";i:12;s:24:"Rhodanese domain protein";i:13;s:9:"Celf_3204";i:14;s:6:"Operon";i:15;s:6:"851390";i:16;s:19:"Celf_3204;Celf_3205";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3869551-3869660";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3869675-3870236";i:10;s:1:"+";i:11;s:9:"Celf_3462";i:12;s:29:"NADPH-dependent FMN reductase";i:13;s:9:"Celf_3462";i:14;s:6:"Operon";i:15;s:6:"851445";i:16;s:49:"Celf_3462;Celf_3463;Celf_3464;Celf_3465;Celf_3466";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4161783-4161878";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"4161954-4163046";i:10;s:1:"+";i:11;s:9:"Celf_3720";i:12;s:39:"Methylenetetrahydrofolate reductase (0)";i:13;s:9:"Celf_3720";i:14;s:6:"Operon";i:15;s:6:"851493";i:16;s:29:"Celf_3720;Celf_3721;Celf_3722";i:17;s:143:"cellular amino acid biosynthetic process [GO:0008652]; methionine metabolic process [GO:0006555]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_015514.1";i:2;s:27:"Cellulomonas fimi ATCC 484 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4173238-4173329";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"4170007-4173049";i:10;s:1:"-";i:11;s:9:"Celf_3728";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"Celf_3728";i:14;s:6:"Operon";i:15;s:6:"851494";i:16;s:29:"Celf_3726;Celf_3727;Celf_3728";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}}