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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
24424-24638
(-)
cobalamin
23288-24248 (-)
Poras_0017
Sirohydrochlorin cobaltochelatase
Poras_0017
Operon
DOOR ID:
848510
Poras_0016,
Poras_0017
View Structure
2
543180-543459
(-)
cobalamin
541440-542913 (-)
Poras_0448
Vinylacetyl-CoA Delta-isomerase
Poras_0448
Operon
DOOR ID:
848607
Poras_0447,
Poras_0448
View Structure
3
1254327-1254428
(-)
TPP
1253997-1254198 (-)
Poras_1000
Thiamine biosynthesis protein ThiS
Poras_1000
Operon
DOOR ID:
848730
Poras_0995,
Poras_0996,
Poras_0997,
Poras_0998,
Poras_0999,
Poras_1000
View Structure
4
1441016-1441136
(+)
FMN
1441239-1441875 (+)
Poras_1121
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Poras_1121
Single gene
DOOR ID:
3128702
Poras_1121
View Structure
5
1806110-1806335
(-)
cobalamin
1803656-1806056 (-)
Poras_1404
Anaerobic ribonucleoside-triphosphate reductase
Poras_1404
Operon
DOOR ID:
848827
Poras_1403,
Poras_1404
View Structure
6
2065603-2065815
(-)
cobalamin
2064310-2065417 (-)
Poras_1624
Poras_1624
Operon
DOOR ID:
848876
Poras_1623,
Poras_1624
View Structure
Genome:
Porphyromonas asaccharolytica DSM 20707
(
NC_015501.1
);
Phylum:
Bacteroidetes/Chlorobi group
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