About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
497020-497123
(+)
TPP
497171-498179 (+)
Thena_0496
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
Thena_0496
Operon
DOOR ID:
847695
Thena_0496,
Thena_0497,
Thena_0498
View Structure
2
874071-874189
(-)
MOCO
872471-873953 (-)
Thena_0877
Aldehyde Dehydrogenase
Thena_0877
Operon
DOOR ID:
847745
Thena_0875,
Thena_0876,
Thena_0877
View Structure
3
1077454-1077516
(+)
fluoride
1077569-1078532 (+)
Thena_1061
Respiratory-chain NADH dehydrogenase subunit 1
Thena_1061
Operon
DOOR ID:
847778
Thena_1061,
Thena_1062,
Thena_1063,
Thena_1064,
Thena_1065,
Thena_1066
View Structure
4
1321580-1321701
(+)
MOCO
1321886-1322873 (+)
Thena_1276
Tungstate ABC transporter binding protein WtpA
Thena_1276
Operon
DOOR ID:
847816
Thena_1276,
Thena_1277,
Thena_1278
View Structure
5
1895883-1896017
(-)
MOCO
1894403-1895084 (-)
Thena_1847
Molybdate ABC transporter; inner membrane subunit
Thena_1847
Operon
DOOR ID:
847935
Thena_1846,
Thena_1847,
Thena_1848
View Structure
Genome:
Thermodesulfobium narugense DSM 14796
(
NC_015499.1
);
Phylum:
Firmicutes
a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015499.1";i:2;s:38:"Thermodesulfobium narugense DSM 14796 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"497020-497123";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"497171-498179";i:10;s:1:"+";i:11;s:10:"Thena_0496";i:12;s:123:"Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)";i:13;s:10:"Thena_0496";i:14;s:6:"Operon";i:15;s:6:"847695";i:16;s:32:"Thena_0496;Thena_0497;Thena_0498";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015499.1";i:2;s:38:"Thermodesulfobium narugense DSM 14796 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"874071-874189";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"872471-873953";i:10;s:1:"-";i:11;s:10:"Thena_0877";i:12;s:22:"Aldehyde Dehydrogenase";i:13;s:10:"Thena_0877";i:14;s:6:"Operon";i:15;s:6:"847745";i:16;s:32:"Thena_0875;Thena_0876;Thena_0877";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015499.1";i:2;s:38:"Thermodesulfobium narugense DSM 14796 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1077454-1077516";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1077569-1078532";i:10;s:1:"+";i:11;s:10:"Thena_1061";i:12;s:46:"Respiratory-chain NADH dehydrogenase subunit 1";i:13;s:10:"Thena_1061";i:14;s:6:"Operon";i:15;s:6:"847778";i:16;s:65:"Thena_1061;Thena_1062;Thena_1063;Thena_1064;Thena_1065;Thena_1066";i:17;s:40:"oxidation-reduction process [GO:0055114]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015499.1";i:2;s:38:"Thermodesulfobium narugense DSM 14796 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1321580-1321701";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1321886-1322873";i:10;s:1:"+";i:11;s:10:"Thena_1276";i:12;s:46:"Tungstate ABC transporter binding protein WtpA";i:13;s:10:"Thena_1276";i:14;s:6:"Operon";i:15;s:6:"847816";i:16;s:32:"Thena_1276;Thena_1277;Thena_1278";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015499.1";i:2;s:38:"Thermodesulfobium narugense DSM 14796 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1895883-1896017";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1894403-1895084";i:10;s:1:"-";i:11;s:10:"Thena_1847";i:12;s:49:"Molybdate ABC transporter; inner membrane subunit";i:13;s:10:"Thena_1847";i:14;s:6:"Operon";i:15;s:6:"847935";i:16;s:32:"Thena_1846;Thena_1847;Thena_1848";i:17;s:0:"";i:18;s:15:"View Structure ";}}