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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
2283369-2283480
(-)
yybP-ykoY
2282728-2283283 (-)
Glaag_1958
Glaag_1958
Single gene
DOOR ID:
3126285
Glaag_1958
View Structure
2
2468774-2468954
(+)
MOCO
2470037-2470736 (+)
Glaag_2107
Molybdenum cofactor guanylyltransferase (7)
Glaag_2107
Single gene
DOOR ID:
3126370
Glaag_2107
View Structure
3
2704638-2704737
(-)
TPP
2702691-2704572 (-)
Glaag_2314
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Glaag_2314
Operon
DOOR ID:
847136
Glaag_2309,
Glaag_2310,
Glaag_2311,
Glaag_2312,
Glaag_2313,
Glaag_2314
View Structure
4
3491122-3491168
(+)
mini-ykkC
3491190-3491505 (+)
Glaag_2993
Glaag_2993
Single gene
DOOR ID:
3126740
Glaag_2993
View Structure
5
3556657-3556762
(-)
TPP
3554519-3556583 (-)
Glaag_3052
TonB-dependent receptor
Glaag_3052
Operon
DOOR ID:
847279
Glaag_3049,
Glaag_3050,
Glaag_3051,
Glaag_3052
View Structure
6
3811092-3811240
(+)
cobalamin
3811344-3812208 (+)
Glaag_3272
ABC transporter related protein
Glaag_3272
Operon
DOOR ID:
847326
Glaag_3272,
Glaag_3273,
Glaag_3274
View Structure
7
3846994-3847173
(+)
cobalamin
3847353-3849222 (+)
Glaag_3299
TonB-dependent receptor plug
Glaag_3299
Single gene
DOOR ID:
3126859
Glaag_3299
View Structure
Genome:
Glaciecola sp. 4H-3-7+YE-5
(
NC_015497.1
);
Phylum:
Gammaproteobacteria
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