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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
41128-41310
(-)
lysine
39508-41044 (-)
UMN179_00039
Na/H antiporter protein
UMN179_00039
Single gene
DOOR ID:
3122677
UMN179_00039
View Structure
2
567923-567967
(+)
PreQ1
567969-568644 (+)
UMN179_00540
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
UMN179_00540
Operon
DOOR ID:
845338
UMN179_00540,
UMN179_00541,
UMN179_00542
View Structure
3
913560-913657
(-)
glycine
912074-913472 (-)
UMN179_00849
Sodium:alanine symporter family
UMN179_00849
Single gene
DOOR ID:
3122919
UMN179_00849
View Structure
4
1372773-1372861
(+)
TPP
1372942-1374004 (+)
UMN179_01267
Thiamine transporter substrate binding subunit
UMN179_01267
Single gene
DOOR ID:
3123043
UMN179_01267
View Structure
5
1379739-1379878
(+)
FMN
1380040-1380679 (+)
UMN179_01275
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
UMN179_01275
Single gene
DOOR ID:
3123049
UMN179_01275
View Structure
6
1953409-1953501
(-)
TPP
1952592-1953321 (-)
UMN179_01813
Taurine transporter ATP-binding subunit
UMN179_01813
Operon
DOOR ID:
845613
UMN179_01807,
UMN179_01808,
UMN179_01809,
UMN179_01810,
UMN179_01811,
UMN179_01812,
UMN179_01813
View Structure
7
2276330-2276429
(-)
TPP
2275288-2276284 (-)
UMN179_02119
Thiamine transporter substrate binding subunit
UMN179_02119
Operon
DOOR ID:
845681
UMN179_02116,
UMN179_02117,
UMN179_02118,
UMN179_02119
View Structure
8
2375522-2375692
(-)
lysine
2374086-2375439 (-)
UMN179_02204
Aspartokinase
UMN179_02204
Single gene
DOOR ID:
3123297
UMN179_02204
View Structure
9
2640670-2640800
(+)
MOCO
2641826-2642309 (+)
UMN179_02472
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
UMN179_02472
Operon
DOOR ID:
845764
UMN179_02471,
UMN179_02472,
UMN179_02473,
UMN179_02474
View Structure
Genome:
Gallibacterium anatis UMN179
(
NC_015460.1
);
Phylum:
Gammaproteobacteria
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threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015460.1";i:2;s:29:"Gallibacterium anatis UMN179 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2640670-2640800";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2641826-2642309";i:10;s:1:"+";i:11;s:12:"UMN179_02472";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:12:"UMN179_02472";i:14;s:6:"Operon";i:15;s:6:"845764";i:16;s:51:"UMN179_02471;UMN179_02472;UMN179_02473;UMN179_02474";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}}
