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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
729900-730010
(-)
TPP
728363-729803 (-)
PT7_0640
Sodium transporter family protein
PT7_0640
Single gene
DOOR ID:
3121672
PT7_0640
View Structure
2
730067-730168
(+)
TPP
730218-731001 (+)
PT7_0641
3-ketoacyl-(Acyl-carrier-protein) reductase
PT7_0641
Operon
DOOR ID:
844562
PT7_0641,
PT7_0642
View Structure
3
1014563-1014660
(-)
TPP
1012575-1014489 (-)
PT7_0909
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
PT7_0909
Single gene
DOOR ID:
3121765
PT7_0909
View Structure
4
1237895-1237941
(+)
mini-ykkC
1237961-1239161 (+)
PT7_1129
PT7_1129
Single gene
DOOR ID:
3121836
PT7_1129
View Structure
5
1928847-1929011
(+)
yybP-ykoY
1929057-1929585 (+)
PT7_1808
Putative manganese efflux pump MntP
PT7_1808
Single gene
DOOR ID:
3122030
PT7_1808
View Structure
6
2298114-2298224
(-)
glycine
2296961-2298056 (-)
PT7_2155
Aminomethyltransferase (0) (Glycine cleavage system T protein)
PT7_2155
Operon
DOOR ID:
844882
PT7_2153,
PT7_2154,
PT7_2155
View Structure
7
2298248-2298336
(-)
glycine
2296961-2298056 (-)
PT7_2155
Aminomethyltransferase (0) (Glycine cleavage system T protein)
PT7_2155
Operon
DOOR ID:
844882
PT7_2153,
PT7_2154,
PT7_2155
View Structure
8
2569230-2569308
(-)
sam-alpha
2567366-2567990 (-)
PT7_2403
Methionine biosynthesis protein
PT7_2403
Operon
DOOR ID:
844936
PT7_2401,
PT7_2402,
PT7_2403,
PT7_2404,
PT7_2405,
PT7_2406
View Structure
9
2571832-2572005
(+)
yybP-ykoY
2572013-2572583 (+)
PT7_2408
Putative manganese efflux pump MntP
PT7_2408
Single gene
DOOR ID:
3122234
PT7_2408
View Structure
10
2714701-2714800
(-)
SAH
2713210-2714638 (-)
PT7_2551
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
PT7_2551
Single gene
DOOR ID:
3122294
PT7_2551
View Structure
11
3582923-3583099
(-)
cobalamin
3580932-3582909 (-)
PT7_3396
Putative outer membrane protein
PT7_3396
Operon
DOOR ID:
845149
PT7_3395,
PT7_3396,
PT7_3397
View Structure
Genome:
Pusillimonas sp. T7-7
(
NC_015458.1
);
Phylum:
Betaproteobacteria
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015458.1";i:2;s:22:"Pusillimonas sp. T7-7 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"729900-730010";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"728363-729803";i:10;s:1:"-";i:11;s:8:"PT7_0640";i:12;s:33:"Sodium transporter family protein";i:13;s:8:"PT7_0640";i:14;s:11:"Single gene";i:15;s:7:"3121672";i:16;s:8:"PT7_0640";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015458.1";i:2;s:22:"Pusillimonas sp. T7-7 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"730067-730168";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"730218-731001";i:10;s:1:"+";i:11;s:8:"PT7_0641";i:12;s:43:"3-ketoacyl-(Acyl-carrier-protein) reductase";i:13;s:8:"PT7_0641";i:14;s:6:"Operon";i:15;s:6:"844562";i:16;s:17:"PT7_0641;PT7_0642";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015458.1";i:2;s:22:"Pusillimonas sp. T7-7 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1014563-1014660";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1012575-1014489";i:10;s:1:"-";i:11;s:8:"PT7_0909";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"PT7_0909";i:14;s:11:"Single gene";i:15;s:7:"3121765";i:16;s:8:"PT7_0909";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015458.1";i:2;s:22:"Pusillimonas sp. T7-7 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1237895-1237941";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1237961-1239161";i:10;s:1:"+";i:11;s:8:"PT7_1129";i:12;s:0:"";i:13;s:8:"PT7_1129";i:14;s:11:"Single gene";i:15;s:7:"3121836";i:16;s:8:"PT7_1129";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015458.1";i:2;s:22:"Pusillimonas sp. T7-7 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1928847-1929011";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1929057-1929585";i:10;s:1:"+";i:11;s:8:"PT7_1808";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:8:"PT7_1808";i:14;s:11:"Single gene";i:15;s:7:"3122030";i:16;s:8:"PT7_1808";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015458.1";i:2;s:22:"Pusillimonas sp. T7-7 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2298114-2298224";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2296961-2298056";i:10;s:1:"-";i:11;s:8:"PT7_2155";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:8:"PT7_2155";i:14;s:6:"Operon";i:15;s:6:"844882";i:16;s:26:"PT7_2153;PT7_2154;PT7_2155";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015458.1";i:2;s:22:"Pusillimonas sp. T7-7 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2298248-2298336";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2296961-2298056";i:10;s:1:"-";i:11;s:8:"PT7_2155";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:8:"PT7_2155";i:14;s:6:"Operon";i:15;s:6:"844882";i:16;s:26:"PT7_2153;PT7_2154;PT7_2155";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015458.1";i:2;s:22:"Pusillimonas sp. T7-7 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2569230-2569308";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"2567366-2567990";i:10;s:1:"-";i:11;s:8:"PT7_2403";i:12;s:31:"Methionine biosynthesis protein";i:13;s:8:"PT7_2403";i:14;s:6:"Operon";i:15;s:6:"844936";i:16;s:53:"PT7_2401;PT7_2402;PT7_2403;PT7_2404;PT7_2405;PT7_2406";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015458.1";i:2;s:22:"Pusillimonas sp. T7-7 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2571832-2572005";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2572013-2572583";i:10;s:1:"+";i:11;s:8:"PT7_2408";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:8:"PT7_2408";i:14;s:11:"Single gene";i:15;s:7:"3122234";i:16;s:8:"PT7_2408";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015458.1";i:2;s:22:"Pusillimonas sp. T7-7 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2714701-2714800";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2713210-2714638";i:10;s:1:"-";i:11;s:8:"PT7_2551";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:8:"PT7_2551";i:14;s:11:"Single gene";i:15;s:7:"3122294";i:16;s:8:"PT7_2551";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015458.1";i:2;s:22:"Pusillimonas sp. T7-7 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3582923-3583099";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3580932-3582909";i:10;s:1:"-";i:11;s:8:"PT7_3396";i:12;s:31:"Putative outer membrane protein";i:13;s:8:"PT7_3396";i:14;s:6:"Operon";i:15;s:6:"845149";i:16;s:26:"PT7_3395;PT7_3396;PT7_3397";i:17;s:0:"";i:18;s:15:"View Structure ";}}
