Genome: Pseudomonas mendocina NK-01 (NC_015410.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 517417-517501 (-)SAH516003-517395 (-)MDS_0481

Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)		MDS_0481Operon

DOOR ID: 836989		MDS_0478,
MDS_0479,
MDS_0480,
MDS_0481		 View Structure
2 740337-740443 (-)TPP738356-740240 (-)MDS_0682

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		MDS_0682Operon

DOOR ID: 837028		MDS_0680,
MDS_0681,
MDS_0682		 View Structure
3 1514543-1514590 (-)mini-ykkC1510823-1514519 (-)MDS_1390

MDS_1390Single gene

DOOR ID: 3108392		MDS_1390 View Structure
4 1517463-1517560 (-)ykkC-yxkD1516326-1517394 (-)MDS_1394

ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein		MDS_1394Single gene

DOOR ID: 3108394		MDS_1394 View Structure
5 1521902-1522002 (-)ykkC-yxkD1520900-1521716 (-)MDS_1399

Binding-protein-dependent transport systems inner membrane component		MDS_1399Operon

DOOR ID: 837184		MDS_1398,
MDS_1399		 View Structure
6 3436730-3436940 (-)cobalamin3435936-3436563 (-)MDS_3112

Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)		MDS_3112Operon

DOOR ID: 837543		MDS_3103,
MDS_3104,
MDS_3105,
MDS_3106,
MDS_3107,
MDS_3108,
MDS_3109,
MDS_3110,
MDS_3111,
MDS_3112		 View Structure
7 4216020-4216191 (-)yybP-ykoY4215443-4216013 (-)MDS_3835

Putative manganese efflux pump MntP		MDS_3835Operon

DOOR ID: 837686		MDS_3833,
MDS_3835		 View Structure
8 4234067-4234155 (-)SAH4232195-4233440 (-)MDS_3852

Saccharopine dehydrogenase		MDS_3852Single gene

DOOR ID: 3109374		MDS_3852 View Structure
9 4376416-4376548 (+)yybP-ykoY4376626-4377211 (+)MDS_3967

MDS_3967Single gene

DOOR ID: 3109420		MDS_3967 View Structure
10 4475983-4476186 (-)cobalamin4475250-4475931 (-)MDS_4070

MDS_4070Single gene

DOOR ID: 3109474		MDS_4070 View Structure
11 4644500-4644715 (+)cobalamin4644805-4646659 (+)MDS_4229

TonB-dependent receptor; plug		MDS_4229Single gene

DOOR ID: 3109518		MDS_4229 View Structure
12 4654879-4655033 (-)FMN4654089-4654752 (-)MDS_4240

Riboflavin synthase subunit alpha		MDS_4240Operon

DOOR ID: 837777		MDS_4239,
MDS_4240		 View Structure
13 5368182-5368376 (-)cobalamin5365810-5367922 (-)MDS_4896

Outer membrane ferric siderophore receptor		MDS_4896Operon

DOOR ID: 837915		MDS_4893,
MDS_4894,
MDS_4895,
MDS_4896		 View Structure
14 5374734-5374982 (+)cobalamin5375078-5376392 (+)MDS_4903

Precorrin-3B synthase		MDS_4903Operon

DOOR ID: 837917		MDS_4903,
MDS_4904,
MDS_4905		 View Structure
15 5409010-5409205 (-)cobalamin5407865-5408915 (-)MDS_4930

Cobalamin biosynthesis protein CobW		MDS_4930Single gene

DOOR ID: 3109787		MDS_4930 View Structure