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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
19445-19543
(+)
TPP
19879-20626 (+)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
CAR_c00180
Operon
DOOR ID:
836178
CAR_c00180
(thiM)
,
CAR_c00190
(thiD)
,
CAR_c00200
(thiE)
View Structure
2
19600-19698
(+)
TPP
19879-20626 (+)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
CAR_c00180
Operon
DOOR ID:
836178
CAR_c00180
(thiM)
,
CAR_c00190
(thiD)
,
CAR_c00200
(thiE)
View Structure
3
105332-105435
(+)
Nico
105533-107369 (+)
cadA1
Cadmium-transporting ATPase
CAR_c01040
Single gene
DOOR ID:
3106615
CAR_c01040
(cadA1)
View Structure
4
277208-277310
(+)
THF
277351-277867 (+)
CAR_c02730
Hypothetical integral membrane protein
CAR_c02730
Single gene
DOOR ID:
3106686
CAR_c02730
View Structure
5
314010-314055
(+)
PreQ1
314055-314556 (+)
CAR_c03080
Hypothetical integral membrane protein
CAR_c03080
Single gene
DOOR ID:
3106698
CAR_c03080
View Structure
6
328915-329095
(+)
lysine
329193-330936 (+)
mleN
Malate-H+/Na+-lactate antiporter
CAR_c03300
Operon
DOOR ID:
836234
CAR_c03300
(mleN)
,
CAR_c03310
View Structure
7
474946-475060
(+)
FMN
475478-476546 (+)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
CAR_c04580
Operon
DOOR ID:
836261
CAR_c04580
(ribD)
,
CAR_c04590
(ribE)
,
CAR_c04600
(ribA)
,
CAR_c04610
(ribH)
,
CAR_c04620
View Structure
8
475213-475328
(+)
FMN
475478-476546 (+)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
CAR_c04580
Operon
DOOR ID:
836261
CAR_c04580
(ribD)
,
CAR_c04590
(ribE)
,
CAR_c04600
(ribA)
,
CAR_c04610
(ribH)
,
CAR_c04620
View Structure
9
501304-501467
(-)
ykoK
498333-500949 (-)
CAR_c04810
Magnesium-translocating P-type ATPase
CAR_c04810
Single gene
DOOR ID:
3106749
CAR_c04810
View Structure
10
559604-559692
(+)
SMK_box
560933-561497 (-)
ytqB
Putative RNA methylase
CAR_c05610
Single gene
DOOR ID:
3106773
CAR_c05610
(ytqB)
View Structure
11
981077-981180
(+)
TPP
981254-981818 (+)
thiT
Thiamin permease
CAR_c09520
Single gene
DOOR ID:
3106940
CAR_c09520
(thiT)
View Structure
12
1055769-1055892
(+)
FMN
1056032-1056614 (+)
fmnP
Riboflavin transporter
CAR_c10230
Single gene
DOOR ID:
3106958
CAR_c10230
(fmnP)
View Structure
13
1889640-1889740
(-)
purine
1888009-1889473 (-)
pbuO
Hypoxanthine/guanine permease
CAR_c18100
Single gene
DOOR ID:
3107251
CAR_c18100
(pbuO)
View Structure
14
2416920-2417023
(-)
Nico
2414997-2416821 (-)
zosA2
Zinc-transporting ATPase
CAR_c23030
Single gene
DOOR ID:
3107446
CAR_c23030
(zosA2)
View Structure
Genome:
Carnobacterium sp. 17-4
(
NC_015391.1
);
Phylum:
Firmicutes
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015391.1";i:2;s:24:"Carnobacterium sp. 17-4 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"19445-19543";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:6:"Tandem";i:9;s:11:"19879-20626";i:10;s:1:"+";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"CAR_c00180";i:14;s:6:"Operon";i:15;s:6:"836178";i:16;s:50:"CAR_c00180(thiM);CAR_c00190(thiD);CAR_c00200(thiE)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015391.1";i:2;s:24:"Carnobacterium sp. 17-4 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"19600-19698";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:6:"Tandem";i:9;s:11:"19879-20626";i:10;s:1:"+";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"CAR_c00180";i:14;s:6:"Operon";i:15;s:6:"836178";i:16;s:50:"CAR_c00180(thiM);CAR_c00190(thiD);CAR_c00200(thiE)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015391.1";i:2;s:24:"Carnobacterium sp. 17-4 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"105332-105435";i:6;s:1:"+";i:7;s:4:"Nico";i:8;s:0:"";i:9;s:13:"105533-107369";i:10;s:1:"+";i:11;s:5:"cadA1";i:12;s:28:"Cadmium-transporting ATPase ";i:13;s:10:"CAR_c01040";i:14;s:11:"Single gene";i:15;s:7:"3106615";i:16;s:17:"CAR_c01040(cadA1)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015391.1";i:2;s:24:"Carnobacterium sp. 17-4 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"277208-277310";i:6;s:1:"+";i:7;s:3:"THF";i:8;s:0:"";i:9;s:13:"277351-277867";i:10;s:1:"+";i:11;s:10:"CAR_c02730";i:12;s:38:"Hypothetical integral membrane protein";i:13;s:10:"CAR_c02730";i:14;s:11:"Single gene";i:15;s:7:"3106686";i:16;s:10:"CAR_c02730";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015391.1";i:2;s:24:"Carnobacterium sp. 17-4 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"314010-314055";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"314055-314556";i:10;s:1:"+";i:11;s:10:"CAR_c03080";i:12;s:38:"Hypothetical integral membrane protein";i:13;s:10:"CAR_c03080";i:14;s:11:"Single gene";i:15;s:7:"3106698";i:16;s:10:"CAR_c03080";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015391.1";i:2;s:24:"Carnobacterium sp. 17-4 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"328915-329095";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"329193-330936";i:10;s:1:"+";i:11;s:4:"mleN";i:12;s:32:"Malate-H+/Na+-lactate antiporter";i:13;s:10:"CAR_c03300";i:14;s:6:"Operon";i:15;s:6:"836234";i:16;s:27:"CAR_c03300(mleN);CAR_c03310";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015391.1";i:2;s:24:"Carnobacterium sp. 17-4 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"474946-475060";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:6:"Tandem";i:9;s:13:"475478-476546";i:10;s:1:"+";i:11;s:4:"ribD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:10:"CAR_c04580";i:14;s:6:"Operon";i:15;s:6:"836261";i:16;s:78:"CAR_c04580(ribD);CAR_c04590(ribE);CAR_c04600(ribA);CAR_c04610(ribH);CAR_c04620";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015391.1";i:2;s:24:"Carnobacterium sp. 17-4 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"475213-475328";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:6:"Tandem";i:9;s:13:"475478-476546";i:10;s:1:"+";i:11;s:4:"ribD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:10:"CAR_c04580";i:14;s:6:"Operon";i:15;s:6:"836261";i:16;s:78:"CAR_c04580(ribD);CAR_c04590(ribE);CAR_c04600(ribA);CAR_c04610(ribH);CAR_c04620";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015391.1";i:2;s:24:"Carnobacterium sp. 17-4 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"501304-501467";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"498333-500949";i:10;s:1:"-";i:11;s:10:"CAR_c04810";i:12;s:38:"Magnesium-translocating P-type ATPase ";i:13;s:10:"CAR_c04810";i:14;s:11:"Single gene";i:15;s:7:"3106749";i:16;s:10:"CAR_c04810";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015391.1";i:2;s:24:"Carnobacterium sp. 17-4 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"559604-559692";i:6;s:1:"+";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:13:"560933-561497";i:10;s:1:"-";i:11;s:4:"ytqB";i:12;s:22:"Putative RNA methylase";i:13;s:10:"CAR_c05610";i:14;s:11:"Single gene";i:15;s:7:"3106773";i:16;s:16:"CAR_c05610(ytqB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015391.1";i:2;s:24:"Carnobacterium sp. 17-4 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"981077-981180";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"981254-981818";i:10;s:1:"+";i:11;s:4:"thiT";i:12;s:16:"Thiamin permease";i:13;s:10:"CAR_c09520";i:14;s:11:"Single gene";i:15;s:7:"3106940";i:16;s:16:"CAR_c09520(thiT)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015391.1";i:2;s:24:"Carnobacterium sp. 17-4 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1055769-1055892";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1056032-1056614";i:10;s:1:"+";i:11;s:4:"fmnP";i:12;s:22:"Riboflavin transporter";i:13;s:10:"CAR_c10230";i:14;s:11:"Single gene";i:15;s:7:"3106958";i:16;s:16:"CAR_c10230(fmnP)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_015391.1";i:2;s:24:"Carnobacterium sp. 17-4 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1889640-1889740";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1888009-1889473";i:10;s:1:"-";i:11;s:4:"pbuO";i:12;s:29:"Hypoxanthine/guanine permease";i:13;s:10:"CAR_c18100";i:14;s:11:"Single gene";i:15;s:7:"3107251";i:16;s:16:"CAR_c18100(pbuO)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_015391.1";i:2;s:24:"Carnobacterium sp. 17-4 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2416920-2417023";i:6;s:1:"-";i:7;s:4:"Nico";i:8;s:0:"";i:9;s:15:"2414997-2416821";i:10;s:1:"-";i:11;s:5:"zosA2";i:12;s:25:"Zinc-transporting ATPase ";i:13;s:10:"CAR_c23030";i:14;s:11:"Single gene";i:15;s:7:"3107446";i:16;s:17:"CAR_c23030(zosA2)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
