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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
136504-136629
(-)
glycine
135289-136408 (-)
bgla_1g01200
Aminomethyltransferase (0) (Glycine cleavage system T protein)
bgla_1g01200
Operon
DOOR ID:
833208
bgla_1g01180,
bgla_1g01190,
bgla_1g01200
View Structure
2
136667-136765
(-)
glycine
135289-136408 (-)
bgla_1g01200
Aminomethyltransferase (0) (Glycine cleavage system T protein)
bgla_1g01200
Operon
DOOR ID:
833208
bgla_1g01180,
bgla_1g01190,
bgla_1g01200
View Structure
3
238488-238575
(+)
SAH
238654-240073 (+)
bgla_1g02150
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
bgla_1g02150
Single gene
DOOR ID:
3102160
bgla_1g02150
View Structure
4
409207-409339
(+)
TPP
409604-410762 (+)
bgla_1g03610
FAD dependent oxidoreductase
bgla_1g03610
Operon
DOOR ID:
833250
bgla_1g03610,
bgla_1g03620,
bgla_1g03630,
bgla_1g03640
View Structure
5
825783-825882
(+)
ZMP-ZTP
826022-827270 (+)
bgla_1g07320
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
bgla_1g07320
Operon
DOOR ID:
833336
bgla_1g07320,
bgla_1g07330
View Structure
6
874755-874821
(+)
SAH
874834-875278 (+)
bgla_1g07800
Putative pre-16S rRNA nuclease
bgla_1g07800
Operon
DOOR ID:
833342
bgla_1g07790,
bgla_1g07800,
bgla_1g07810,
bgla_1g07820,
bgla_1g07830,
bgla_1g07840
View Structure
7
1314762-1314878
(-)
TPP
1312756-1314688 (-)
bgla_1g11810
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
bgla_1g11810
Single gene
DOOR ID:
3102491
bgla_1g11810
View Structure
8
2163491-2163716
(-)
cobalamin
2162927-2163347 (-)
bgla_1g19230
CbiG protein
bgla_1g19230
Single gene
DOOR ID:
3102813
bgla_1g19230
View Structure
9
2163868-2164137
(+)
cobalamin
2164378-2165449 (+)
bgla_1g19250
bgla_1g19250
Operon
DOOR ID:
833551
bgla_1g19240,
bgla_1g19250,
bgla_1g19260,
bgla_1g19270,
bgla_1g19280
View Structure
10
2565463-2565627
(+)
yybP-ykoY
2565637-2566204 (+)
bgla_1g22370
Putative manganese efflux pump MntP
bgla_1g22370
Single gene
DOOR ID:
3102947
bgla_1g22370
View Structure
11
3579582-3579788
(-)
cobalamin
3577526-3579494 (-)
bgla_1g31480
Putative TonB-dependent vitamin B12 receptor BtuB
bgla_1g31480
Operon
DOOR ID:
833800
bgla_1g31430,
bgla_1g31440,
bgla_1g31450,
bgla_1g31460,
bgla_1g31470,
bgla_1g31480
View Structure
Genome:
Burkholderia gladioli BSR3 chromosome I
(
NC_015381.1
);
Phylum:
Betaproteobacteria
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015381.1";i:2;s:39:"Burkholderia gladioli BSR3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"136504-136629";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"135289-136408";i:10;s:1:"-";i:11;s:12:"bgla_1g01200";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:12:"bgla_1g01200";i:14;s:6:"Operon";i:15;s:6:"833208";i:16;s:38:"bgla_1g01180;bgla_1g01190;bgla_1g01200";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015381.1";i:2;s:39:"Burkholderia gladioli BSR3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"136667-136765";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"135289-136408";i:10;s:1:"-";i:11;s:12:"bgla_1g01200";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:12:"bgla_1g01200";i:14;s:6:"Operon";i:15;s:6:"833208";i:16;s:38:"bgla_1g01180;bgla_1g01190;bgla_1g01200";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015381.1";i:2;s:39:"Burkholderia gladioli BSR3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"238488-238575";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"238654-240073";i:10;s:1:"+";i:11;s:12:"bgla_1g02150";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:12:"bgla_1g02150";i:14;s:11:"Single gene";i:15;s:7:"3102160";i:16;s:12:"bgla_1g02150";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015381.1";i:2;s:39:"Burkholderia gladioli BSR3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"409207-409339";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"409604-410762";i:10;s:1:"+";i:11;s:12:"bgla_1g03610";i:12;s:28:"FAD dependent oxidoreductase";i:13;s:12:"bgla_1g03610";i:14;s:6:"Operon";i:15;s:6:"833250";i:16;s:51:"bgla_1g03610;bgla_1g03620;bgla_1g03630;bgla_1g03640";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015381.1";i:2;s:39:"Burkholderia gladioli BSR3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"825783-825882";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"826022-827270";i:10;s:1:"+";i:11;s:12:"bgla_1g07320";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:12:"bgla_1g07320";i:14;s:6:"Operon";i:15;s:6:"833336";i:16;s:25:"bgla_1g07320;bgla_1g07330";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015381.1";i:2;s:39:"Burkholderia gladioli BSR3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"874755-874821";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"874834-875278";i:10;s:1:"+";i:11;s:12:"bgla_1g07800";i:12;s:31:"Putative pre-16S rRNA nuclease ";i:13;s:12:"bgla_1g07800";i:14;s:6:"Operon";i:15;s:6:"833342";i:16;s:77:"bgla_1g07790;bgla_1g07800;bgla_1g07810;bgla_1g07820;bgla_1g07830;bgla_1g07840";i:17;s:35:"rRNA 5'-end processing [GO:0000967]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015381.1";i:2;s:39:"Burkholderia gladioli BSR3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1314762-1314878";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1312756-1314688";i:10;s:1:"-";i:11;s:12:"bgla_1g11810";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:12:"bgla_1g11810";i:14;s:11:"Single gene";i:15;s:7:"3102491";i:16;s:12:"bgla_1g11810";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015381.1";i:2;s:39:"Burkholderia gladioli BSR3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2163491-2163716";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2162927-2163347";i:10;s:1:"-";i:11;s:12:"bgla_1g19230";i:12;s:12:"CbiG protein";i:13;s:12:"bgla_1g19230";i:14;s:11:"Single gene";i:15;s:7:"3102813";i:16;s:12:"bgla_1g19230";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015381.1";i:2;s:39:"Burkholderia gladioli BSR3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2163868-2164137";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2164378-2165449";i:10;s:1:"+";i:11;s:12:"bgla_1g19250";i:12;s:0:"";i:13;s:12:"bgla_1g19250";i:14;s:6:"Operon";i:15;s:6:"833551";i:16;s:64:"bgla_1g19240;bgla_1g19250;bgla_1g19260;bgla_1g19270;bgla_1g19280";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015381.1";i:2;s:39:"Burkholderia gladioli BSR3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2565463-2565627";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2565637-2566204";i:10;s:1:"+";i:11;s:12:"bgla_1g22370";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:12:"bgla_1g22370";i:14;s:11:"Single gene";i:15;s:7:"3102947";i:16;s:12:"bgla_1g22370";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015381.1";i:2;s:39:"Burkholderia gladioli BSR3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3579582-3579788";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3577526-3579494";i:10;s:1:"-";i:11;s:12:"bgla_1g31480";i:12;s:49:"Putative TonB-dependent vitamin B12 receptor BtuB";i:13;s:12:"bgla_1g31480";i:14;s:6:"Operon";i:15;s:6:"833800";i:16;s:77:"bgla_1g31430;bgla_1g31440;bgla_1g31450;bgla_1g31460;bgla_1g31470;bgla_1g31480";i:17;s:0:"";i:18;s:15:"View Structure ";}}