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Genome:
Burkholderia gladioli BSR3 chromosome II
(
NC_015376.1
);
Phylum:
Betaproteobacteria
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1307295-1307373
(+)
cobalamin
1307709-1309965 (+)
bgla_2g10490
TonB-dependent siderophore receptor
bgla_2g10490
Operon
DOOR ID:
831288
bgla_2g10490,
bgla_2g10500,
bgla_2g10510,
bgla_2g10520
View Structure
2
1849388-1849539
(-)
cobalamin
1848173-1849358 (-)
bgla_2g14750
Porin
bgla_2g14750
Single gene
DOOR ID:
3098533
bgla_2g14750
View Structure
3
1918180-1918336
(+)
FMN
1918406-1918919 (+)
bgla_2g15310
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
bgla_2g15310
Single gene
DOOR ID:
3098563
bgla_2g15310
View Structure
4
2792760-2792828
(-)
fluoride
2791360-2792677 (-)
bgla_2g22120
Voltage-gated chloride channel
bgla_2g22120
Single gene
DOOR ID:
3098875
bgla_2g22120
View Structure
5
3053944-3054124
(-)
yybP-ykoY
3052883-3053876 (-)
bgla_2g24440
Putative Ca2+/Na+ antiporter
bgla_2g24440
Single gene
DOOR ID:
3099008
bgla_2g24440
View Structure
6
3192429-3192554
(-)
ykkC-yxkD
3191628-3192375 (-)
bgla_2g25620
bgla_2g25620
Operon
DOOR ID:
831540
bgla_2g25580,
bgla_2g25590,
bgla_2g25600,
bgla_2g25610,
bgla_2g25620
View Structure
7
3193160-3193282
(+)
ykkC-yxkD
3193422-3194499 (+)
bgla_2g25630
ABC transport system substrate-binding protein
bgla_2g25630
Single gene
DOOR ID:
3099067
bgla_2g25630
View Structure
8
3355528-3355596
(-)
cobalamin
3355242-3355452 (-)
bgla_2g27170
bgla_2g27170
Operon
DOOR ID:
831566
bgla_2g27160,
bgla_2g27170
View Structure
a:9:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015376.1";i:2;s:40:"Burkholderia gladioli BSR3 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1307295-1307373";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1307709-1309965";i:10;s:1:"+";i:11;s:12:"bgla_2g10490";i:12;s:35:"TonB-dependent siderophore receptor";i:13;s:12:"bgla_2g10490";i:14;s:6:"Operon";i:15;s:6:"831288";i:16;s:51:"bgla_2g10490;bgla_2g10500;bgla_2g10510;bgla_2g10520";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015376.1";i:2;s:40:"Burkholderia gladioli BSR3 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1849388-1849539";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1848173-1849358";i:10;s:1:"-";i:11;s:12:"bgla_2g14750";i:12;s:5:"Porin";i:13;s:12:"bgla_2g14750";i:14;s:11:"Single gene";i:15;s:7:"3098533";i:16;s:12:"bgla_2g14750";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015376.1";i:2;s:40:"Burkholderia gladioli BSR3 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1918180-1918336";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1918406-1918919";i:10;s:1:"+";i:11;s:12:"bgla_2g15310";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:12:"bgla_2g15310";i:14;s:11:"Single gene";i:15;s:7:"3098563";i:16;s:12:"bgla_2g15310";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015376.1";i:2;s:40:"Burkholderia gladioli BSR3 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2792760-2792828";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2791360-2792677";i:10;s:1:"-";i:11;s:12:"bgla_2g22120";i:12;s:30:"Voltage-gated chloride channel";i:13;s:12:"bgla_2g22120";i:14;s:11:"Single gene";i:15;s:7:"3098875";i:16;s:12:"bgla_2g22120";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015376.1";i:2;s:40:"Burkholderia gladioli BSR3 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3053944-3054124";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3052883-3053876";i:10;s:1:"-";i:11;s:12:"bgla_2g24440";i:12;s:28:"Putative Ca2+/Na+ antiporter";i:13;s:12:"bgla_2g24440";i:14;s:11:"Single gene";i:15;s:7:"3099008";i:16;s:12:"bgla_2g24440";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015376.1";i:2;s:40:"Burkholderia gladioli BSR3 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3192429-3192554";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"3191628-3192375";i:10;s:1:"-";i:11;s:12:"bgla_2g25620";i:12;s:0:"";i:13;s:12:"bgla_2g25620";i:14;s:6:"Operon";i:15;s:6:"831540";i:16;s:64:"bgla_2g25580;bgla_2g25590;bgla_2g25600;bgla_2g25610;bgla_2g25620";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015376.1";i:2;s:40:"Burkholderia gladioli BSR3 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3193160-3193282";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"3193422-3194499";i:10;s:1:"+";i:11;s:12:"bgla_2g25630";i:12;s:46:"ABC transport system substrate-binding protein";i:13;s:12:"bgla_2g25630";i:14;s:11:"Single gene";i:15;s:7:"3099067";i:16;s:12:"bgla_2g25630";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015376.1";i:2;s:40:"Burkholderia gladioli BSR3 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3355528-3355596";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3355242-3355452";i:10;s:1:"-";i:11;s:12:"bgla_2g27170";i:12;s:0:"";i:13;s:12:"bgla_2g27170";i:14;s:6:"Operon";i:15;s:6:"831566";i:16;s:25:"bgla_2g27160;bgla_2g27170";i:17;s:0:"";i:18;s:15:"View Structure ";}}