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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
463370-463414
(+)
PreQ1
463421-463925 (+)
HMPREF9243_0468
HMPREF9243_0468
Single gene
DOOR ID:
3090643
HMPREF9243_0468
View Structure
2
528705-528830
(+)
FMN
528895-529735 (+)
HMPREF9243_0537
Energy-coupling factor transporter ATP-binding protein EcfA
HMPREF9243_0537
Operon
DOOR ID:
826358
HMPREF9243_0537,
HMPREF9243_0538,
HMPREF9243_0539,
HMPREF9243_0541,
HMPREF9243_0542,
HMPREF9243_0543,
HMPREF9243_0545
(rplM)
,
HMPREF9243_0546
(rpsI)
View Structure
3
715456-715541
(+)
fluoride
715590-716775 (+)
HMPREF9243_0706
Transporter; CPA2 family
HMPREF9243_0706
Single gene
DOOR ID:
3090723
HMPREF9243_0706
View Structure
4
716873-716964
(+)
THF
717027-717570 (+)
HMPREF9243_0707
HMPREF9243_0707
Single gene
DOOR ID:
3090724
HMPREF9243_0707
View Structure
5
1207496-1207590
(-)
TPP
1206930-1207470 (-)
thiW
Protein ThiW
HMPREF9243_1174
Single gene
DOOR ID:
3090853
HMPREF9243_1174
(thiW)
View Structure
6
1367118-1367236
(-)
FMN
1366418-1367009 (-)
HMPREF9243_1361
Riboflavin transporter
HMPREF9243_1361
Single gene
DOOR ID:
3090895
HMPREF9243_1361
View Structure
7
1499418-1499574
(-)
glmS
1497552-1499361 (-)
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
HMPREF9243_1499
Single gene
DOOR ID:
3090932
HMPREF9243_1499
(glmS)
View Structure
8
1624327-1624426
(-)
TPP
1623706-1624273 (-)
HMPREF9243_1613
Putative proton-coupled thiamine transporter YuaJ
HMPREF9243_1613
Single gene
DOOR ID:
3090972
HMPREF9243_1613
View Structure
9
1703078-1703246
(-)
ykoK
1702892-1703042 (-)
HMPREF9243_1691
HMPREF9243_1691
Operon
DOOR ID:
826559
HMPREF9243_1690
(mgtA)
,
HMPREF9243_1691
View Structure
10
1753643-1753778
(-)
cobalamin
1753039-1753510 (-)
HMPREF9243_1743
Putative flavodoxin
HMPREF9243_1743
Operon
DOOR ID:
826568
HMPREF9243_1742
(cobB)
,
HMPREF9243_1743
View Structure
Genome:
Aerococcus urinae ACS-120-V-Col10a
(
NC_015278.1
);
Phylum:
Firmicutes
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CPA2 family";i:13;s:15:"HMPREF9243_0706";i:14;s:11:"Single gene";i:15;s:7:"3090723";i:16;s:15:"HMPREF9243_0706";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015278.1";i:2;s:35:"Aerococcus urinae ACS-120-V-Col10a ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"716873-716964";i:6;s:1:"+";i:7;s:3:"THF";i:8;s:0:"";i:9;s:13:"717027-717570";i:10;s:1:"+";i:11;s:15:"HMPREF9243_0707";i:12;s:0:"";i:13;s:15:"HMPREF9243_0707";i:14;s:11:"Single gene";i:15;s:7:"3090724";i:16;s:15:"HMPREF9243_0707";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015278.1";i:2;s:35:"Aerococcus urinae ACS-120-V-Col10a ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1207496-1207590";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1206930-1207470";i:10;s:1:"-";i:11;s:4:"thiW";i:12;s:12:"Protein ThiW";i:13;s:15:"HMPREF9243_1174";i:14;s:11:"Single gene";i:15;s:7:"3090853";i:16;s:21:"HMPREF9243_1174(thiW)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015278.1";i:2;s:35:"Aerococcus urinae ACS-120-V-Col10a ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1367118-1367236";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1366418-1367009";i:10;s:1:"-";i:11;s:15:"HMPREF9243_1361";i:12;s:22:"Riboflavin transporter";i:13;s:15:"HMPREF9243_1361";i:14;s:11:"Single gene";i:15;s:7:"3090895";i:16;s:15:"HMPREF9243_1361";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015278.1";i:2;s:35:"Aerococcus urinae ACS-120-V-Col10a ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1499418-1499574";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"1497552-1499361";i:10;s:1:"-";i:11;s:4:"glmS";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:15:"HMPREF9243_1499";i:14;s:11:"Single gene";i:15;s:7:"3090932";i:16;s:21:"HMPREF9243_1499(glmS)";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015278.1";i:2;s:35:"Aerococcus urinae ACS-120-V-Col10a ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1624327-1624426";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1623706-1624273";i:10;s:1:"-";i:11;s:15:"HMPREF9243_1613";i:12;s:49:"Putative proton-coupled thiamine transporter YuaJ";i:13;s:15:"HMPREF9243_1613";i:14;s:11:"Single gene";i:15;s:7:"3090972";i:16;s:15:"HMPREF9243_1613";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015278.1";i:2;s:35:"Aerococcus urinae ACS-120-V-Col10a ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1703078-1703246";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1702892-1703042";i:10;s:1:"-";i:11;s:15:"HMPREF9243_1691";i:12;s:0:"";i:13;s:15:"HMPREF9243_1691";i:14;s:6:"Operon";i:15;s:6:"826559";i:16;s:37:"HMPREF9243_1690(mgtA);HMPREF9243_1691";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015278.1";i:2;s:35:"Aerococcus urinae ACS-120-V-Col10a ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1753643-1753778";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1753039-1753510";i:10;s:1:"-";i:11;s:15:"HMPREF9243_1743";i:12;s:19:"Putative flavodoxin";i:13;s:15:"HMPREF9243_1743";i:14;s:6:"Operon";i:15;s:6:"826568";i:16;s:37:"HMPREF9243_1742(cobB);HMPREF9243_1743";i:17;s:0:"";i:18;s:15:"View Structure ";}}
