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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1244410-1244693
(+)
cobalamin
1244725-1245400 (+)
Marme_1108
Marme_1108
Single gene
DOOR ID:
3087118
Marme_1108
View Structure
2
1415440-1415585
(-)
FMN
1414818-1415304 (-)
Marme_1272
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
Marme_1272
Single gene
DOOR ID:
3087175
Marme_1272
View Structure
3
2084077-2084183
(+)
TPP
2084376-2086326 (+)
Marme_1902
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Marme_1902
Operon
DOOR ID:
1194366
Marme_1902,
Marme_1903,
Marme_1904,
Marme_1905,
Marme_1906
View Structure
4
3586224-3586347
(-)
TPP
3585171-3586179 (-)
Marme_3266
Thiamine ABC transporter; periplasmic binding protein
Marme_3266
Operon
DOOR ID:
1194640
Marme_3263,
Marme_3264,
Marme_3265,
Marme_3266
View Structure
5
4234367-4234560
(+)
FMN
4234681-4235617 (+)
Marme_3837
Marme_3837
Single gene
DOOR ID:
3088139
Marme_3837
View Structure
6
4439442-4439517
(+)
sam-alpha
4439595-4440759 (+)
Marme_4016
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Marme_4016
Operon
DOOR ID:
1194788
Marme_4016,
Marme_4017
View Structure
7
4460271-4460433
(+)
yybP-ykoY
4461148-4462210 (-)
Marme_4035
Transcriptional regulator; LacI family
Marme_4035
Operon
DOOR ID:
1194795
Marme_4035,
Marme_4036,
Marme_4037
View Structure
Genome:
Marinomonas mediterranea MMB-1
(
NC_015276.1
);
Phylum:
Gammaproteobacteria
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