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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1002764-1002866
(+)
TPP
1003021-1003765 (+)
SL003B_0936
ABC transporter; permease protein; putative
SL003B_0936
Operon
DOOR ID:
823650
SL003B_0936,
SL003B_0937
View Structure
2
1272381-1272594
(-)
cobalamin
1271646-1272330 (-)
SL003B_1184
Precorrin 6A synthase
SL003B_1184
Single gene
DOOR ID:
3084114
SL003B_1184
View Structure
3
1554510-1554719
(-)
cobalamin
1554188-1554410 (-)
SL003B_1450
Ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit
SL003B_1450
Single gene
DOOR ID:
3084238
SL003B_1450
View Structure
4
1582617-1582727
(+)
TPP
1582804-1583563 (+)
SL003B_1478
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
SL003B_1478
Operon
DOOR ID:
823761
SL003B_1478,
SL003B_1479,
SL003B_1480
View Structure
5
1655729-1655789
(+)
SAH
1656304-1657042 (-)
fliP
Flagellar biosynthetic protein FliP
SL003B_1544
Operon
DOOR ID:
823775
SL003B_1544
(fliP)
,
SL003B_1545
View Structure
6
2129043-2129275
(+)
cobalamin
2129307-2129952 (+)
SL003B_2028
Hydrogenase accessory protein-like protein
SL003B_2028
Operon
DOOR ID:
823876
SL003B_2028,
SL003B_2029,
SL003B_2030
(cobW)
View Structure
7
3512543-3512622
(+)
sam-alpha
3512667-3513882 (+)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
SL003B_3255
Single gene
DOOR ID:
3084851
SL003B_3255
(metZ)
View Structure
8
3649433-3649537
(-)
glycine
3648118-3649258 (-)
SL003B_3379
Aminomethyltransferase
SL003B_3379
Operon
DOOR ID:
824145
SL003B_3377,
SL003B_3378
(gcvH)
,
SL003B_3379
View Structure
Genome:
Polymorphum gilvum SL003B-26A1
(
NC_015259.1
);
Phylum:
Alphaproteobacteria
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