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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
163117-163344
(+)
cobalamin
163411-165310 (+)
YE105_C0137
YE105_C0137
Single gene
DOOR ID:
3081914
YE105_C0137
View Structure
2
364277-364402
(-)
TPP
362193-364161 (-)
YE105_C0295
YE105_C0295
Operon
DOOR ID:
822764
YE105_C0290,
YE105_C0291,
YE105_C0292,
YE105_C0293,
YE105_C0294,
YE105_C0295
View Structure
3
459752-459799
(+)
mini-ykkC
459818-460133 (+)
YE105_C0381
YE105_C0381
Single gene
DOOR ID:
3081991
YE105_C0381
View Structure
4
775340-775448
(-)
TPP
774275-775265 (-)
YE105_C0647
YE105_C0647
Operon
DOOR ID:
822829
YE105_C0645,
YE105_C0646,
YE105_C0647
View Structure
5
1634300-1634444
(+)
MOCO
1635442-1635922 (+)
YE105_C1381
YE105_C1381
Operon
DOOR ID:
822981
YE105_C1380,
YE105_C1381,
YE105_C1382,
YE105_C1383
View Structure
6
1647421-1647590
(+)
ykoK
1647665-1648697 (+)
YE105_C1393
YE105_C1393
Single gene
DOOR ID:
3082425
YE105_C1393
View Structure
7
1833738-1833919
(+)
cobalamin
1834027-1835431 (+)
YE105_C1560
YE105_C1560
Operon
DOOR ID:
823011
YE105_C1560,
YE105_C1561,
YE105_C1562,
YE105_C1563,
YE105_C1564,
YE105_C1565,
YE105_C1566,
YE105_C1567,
YE105_C1568,
YE105_C1569,
YE105_C1570,
YE105_C1571
View Structure
8
2754813-2755027
(+)
yybP-ykoY
2755037-2755607 (+)
YE105_C2396
YE105_C2396
Single gene
DOOR ID:
3082924
YE105_C2396
View Structure
9
3482300-3482403
(-)
TPP
3480461-3481325 (+)
YE105_C2997
YE105_C2997
Single gene
DOOR ID:
3083234
YE105_C2997
View Structure
10
3878490-3878674
(-)
FMN
3877694-3878333 (-)
YE105_C3367
YE105_C3367
Single gene
DOOR ID:
3083397
YE105_C3367
View Structure
Genome:
Yersinia enterocolitica subsp. palearctica 105.5R(r)
(
NC_015224.1
);
Phylum:
Gammaproteobacteria
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