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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
52066-52171
(-)
ykkC-yxkD
50569-52003 (-)
NAL212_0211
Amino acid permease-associated region
NAL212_0211
Operon
DOOR ID:
822108
NAL212_0207,
NAL212_0208,
NAL212_0209,
NAL212_0210,
NAL212_0211
View Structure
2
73656-73752
(-)
glycine
71131-72331 (-)
NAL212_0224
AAA ATPase
NAL212_0224
Operon
DOOR ID:
822111
NAL212_0222,
NAL212_0223,
NAL212_0224
View Structure
3
1184356-1184435
(-)
c-di-GMP-I
1183388-1184204 (-)
NAL212_1278
Uncharacterized protein
NAL212_1278
single gene
DOOR ID:
3081125
NAL212_1278
View Structure
4
1508204-1508424
(-)
cobalamin
1506213-1508067 (-)
NAL212_1569
TonB-dependent vitamin B12 receptor
NAL212_1569
Operon
DOOR ID:
822371
NAL212_1567,
NAL212_1568,
NAL212_1569
View Structure
5
1516586-1516663
(+)
SAH
1516679-1518113 (+)
NAL212_1576
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
NAL212_1576
Single gene
DOOR ID:
3081238
NAL212_1576
View Structure
6
1865126-1865228
(-)
glycine
1863992-1865075 (-)
NAL212_1914
Aminomethyltransferase (0) (Glycine cleavage system T protein)
NAL212_1914
Operon
DOOR ID:
822424
NAL212_1909,
NAL212_1910,
NAL212_1911,
NAL212_1912,
NAL212_1913,
NAL212_1914
View Structure
7
2586089-2586175
(-)
c-di-GMP-I
2584815-2585982 (-)
NAL212_2625
Uncharacterized protein
NAL212_2625
single gene
DOOR ID:
3081617
NAL212_2625
View Structure
8
2586329-2586415
(-)
c-di-GMP-I
2584815-2585982 (-)
NAL212_2625
Uncharacterized protein
NAL212_2625
single gene
DOOR ID:
3081617
NAL212_2625
View Structure
9
2587877-2587963
(-)
c-di-GMP-I
2586604-2587768 (-)
NAL212_2626
Uncharacterized protein
NAL212_2626
single gene
DOOR ID:
3081618
NAL212_2626
View Structure
10
2722403-2722449
(-)
mini-ykkC
2722061-2722382 (-)
NAL212_2763
NAL212_2763
Single gene
DOOR ID:
3081657
NAL212_2763
View Structure
11
3170572-3170678
(-)
TPP
3168639-3170535 (-)
NAL212_3188
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
NAL212_3188
Operon
DOOR ID:
822684
NAL212_3187,
NAL212_3188
View Structure
Genome:
Nitrosomonas sp. AL212
(
NC_015222.1
);
Phylum:
Betaproteobacteria
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AL212 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1184356-1184435";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1183388-1184204";i:10;s:1:"-";i:11;s:11:"NAL212_1278";i:12;s:23:"Uncharacterized protein";i:13;s:11:"NAL212_1278";i:14;s:11:"single gene";i:15;s:7:"3081125";i:16;s:11:"NAL212_1278";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015222.1";i:2;s:23:"Nitrosomonas sp. AL212 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1508204-1508424";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1506213-1508067";i:10;s:1:"-";i:11;s:11:"NAL212_1569";i:12;s:35:"TonB-dependent vitamin B12 receptor";i:13;s:11:"NAL212_1569";i:14;s:6:"Operon";i:15;s:6:"822371";i:16;s:35:"NAL212_1567;NAL212_1568;NAL212_1569";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015222.1";i:2;s:23:"Nitrosomonas sp. 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AL212 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1865126-1865228";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1863992-1865075";i:10;s:1:"-";i:11;s:11:"NAL212_1914";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:11:"NAL212_1914";i:14;s:6:"Operon";i:15;s:6:"822424";i:16;s:71:"NAL212_1909;NAL212_1910;NAL212_1911;NAL212_1912;NAL212_1913;NAL212_1914";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015222.1";i:2;s:23:"Nitrosomonas sp. AL212 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2586089-2586175";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"2584815-2585982";i:10;s:1:"-";i:11;s:11:"NAL212_2625";i:12;s:23:"Uncharacterized protein";i:13;s:11:"NAL212_2625";i:14;s:11:"single gene";i:15;s:7:"3081617";i:16;s:11:"NAL212_2625";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015222.1";i:2;s:23:"Nitrosomonas sp. AL212 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2586329-2586415";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"2584815-2585982";i:10;s:1:"-";i:11;s:11:"NAL212_2625";i:12;s:23:"Uncharacterized protein";i:13;s:11:"NAL212_2625";i:14;s:11:"single gene";i:15;s:7:"3081617";i:16;s:11:"NAL212_2625";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015222.1";i:2;s:23:"Nitrosomonas sp. AL212 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2587877-2587963";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2586604-2587768";i:10;s:1:"-";i:11;s:11:"NAL212_2626";i:12;s:23:"Uncharacterized protein";i:13;s:11:"NAL212_2626";i:14;s:11:"single gene";i:15;s:7:"3081618";i:16;s:11:"NAL212_2626";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015222.1";i:2;s:23:"Nitrosomonas sp. AL212 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2722403-2722449";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2722061-2722382";i:10;s:1:"-";i:11;s:11:"NAL212_2763";i:12;s:0:"";i:13;s:11:"NAL212_2763";i:14;s:11:"Single gene";i:15;s:7:"3081657";i:16;s:11:"NAL212_2763";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015222.1";i:2;s:23:"Nitrosomonas sp. AL212 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3170572-3170678";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3168639-3170535";i:10;s:1:"-";i:11;s:11:"NAL212_3188";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"NAL212_3188";i:14;s:6:"Operon";i:15;s:6:"822684";i:16;s:23:"NAL212_3187;NAL212_3188";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
