About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
630599-630689
(-)
THF
629991-630552 (-)
SGGBAA2069_c05970
SGGBAA2069_c05970
Single gene
DOOR ID:
3079003
SGGBAA2069_c05970
View Structure
2
677163-677412
(+)
FMN
677629-678685 (+)
ribD
SGGBAA2069_c06490
Operon
DOOR ID:
821228
SGGBAA2069_c06490
(ribD)
,
SGGBAA2069_c06500
(ribB)
,
SGGBAA2069_c06510
(ribA)
,
SGGBAA2069_c06520
(ribH)
View Structure
3
687413-687510
(-)
TPP
686175-686742 (+)
SGGBAA2069_c06590
SGGBAA2069_c06590
Operon
DOOR ID:
821229
SGGBAA2069_c06570,
SGGBAA2069_c06580
(corA)
,
SGGBAA2069_c06590
View Structure
4
789841-789953
(+)
preQ1-II
789956-790466 (+)
SGGBAA2069_c07500
SGGBAA2069_c07500
Single gene
DOOR ID:
3079052
SGGBAA2069_c07500
View Structure
5
1052426-1052521
(+)
purine
1052695-1053277 (+)
xpt
SGGBAA2069_c10050
Operon
DOOR ID:
821302
SGGBAA2069_c10050
(xpt)
,
SGGBAA2069_c10060
(pbuX)
View Structure
6
1232529-1232618
(-)
TPP
1231773-1232352 (-)
thiW
SGGBAA2069_c11740
Operon
DOOR ID:
821338
SGGBAA2069_c11680
(thiE)
,
SGGBAA2069_c11690
(thiM)
,
SGGBAA2069_c11700
(thiD1)
,
SGGBAA2069_c11710
(tenA)
,
SGGBAA2069_c11720,
SGGBAA2069_c11730,
SGGBAA2069_c11740
(thiW)
View Structure
7
1240948-1241139
(+)
glycine
1242641-1243010 (-)
SGGBAA2069_c11820
SGGBAA2069_c11820
Operon
DOOR ID:
821340
SGGBAA2069_c11820,
SGGBAA2069_c11830
View Structure
8
1806915-1807168
(-)
FMN
1806263-1806833 (-)
SGGBAA2069_c17490
SGGBAA2069_c17490
Operon
DOOR ID:
821471
SGGBAA2069_c17490,
SGGBAA2069_c17500
View Structure
Genome:
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069
(
NC_015215.1
);
Phylum:
Firmicutes
a:9:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015215.1";i:2;s:60:"Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"630599-630689";i:6;s:1:"-";i:7;s:3:"THF";i:8;s:0:"";i:9;s:13:"629991-630552";i:10;s:1:"-";i:11;s:17:"SGGBAA2069_c05970";i:12;s:0:"";i:13;s:17:"SGGBAA2069_c05970";i:14;s:11:"Single gene";i:15;s:7:"3079003";i:16;s:17:"SGGBAA2069_c05970";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015215.1";i:2;s:60:"Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"677163-677412";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"677629-678685";i:10;s:1:"+";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:17:"SGGBAA2069_c06490";i:14;s:6:"Operon";i:15;s:6:"821228";i:16;s:95:"SGGBAA2069_c06490(ribD);SGGBAA2069_c06500(ribB);SGGBAA2069_c06510(ribA);SGGBAA2069_c06520(ribH)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015215.1";i:2;s:60:"Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"687413-687510";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"686175-686742";i:10;s:1:"+";i:11;s:17:"SGGBAA2069_c06590";i:12;s:0:"";i:13;s:17:"SGGBAA2069_c06590";i:14;s:6:"Operon";i:15;s:6:"821229";i:16;s:59:"SGGBAA2069_c06570;SGGBAA2069_c06580(corA);SGGBAA2069_c06590";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015215.1";i:2;s:60:"Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"789841-789953";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"789956-790466";i:10;s:1:"+";i:11;s:17:"SGGBAA2069_c07500";i:12;s:0:"";i:13;s:17:"SGGBAA2069_c07500";i:14;s:11:"Single gene";i:15;s:7:"3079052";i:16;s:17:"SGGBAA2069_c07500";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015215.1";i:2;s:60:"Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1052426-1052521";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1052695-1053277";i:10;s:1:"+";i:11;s:3:"xpt";i:12;s:0:"";i:13;s:17:"SGGBAA2069_c10050";i:14;s:6:"Operon";i:15;s:6:"821302";i:16;s:46:"SGGBAA2069_c10050(xpt);SGGBAA2069_c10060(pbuX)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015215.1";i:2;s:60:"Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1232529-1232618";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1231773-1232352";i:10;s:1:"-";i:11;s:4:"thiW";i:12;s:0:"";i:13;s:17:"SGGBAA2069_c11740";i:14;s:6:"Operon";i:15;s:6:"821338";i:16;s:156:"SGGBAA2069_c11680(thiE);SGGBAA2069_c11690(thiM);SGGBAA2069_c11700(thiD1);SGGBAA2069_c11710(tenA);SGGBAA2069_c11720;SGGBAA2069_c11730;SGGBAA2069_c11740(thiW)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015215.1";i:2;s:60:"Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1240948-1241139";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1242641-1243010";i:10;s:1:"-";i:11;s:17:"SGGBAA2069_c11820";i:12;s:0:"";i:13;s:17:"SGGBAA2069_c11820";i:14;s:6:"Operon";i:15;s:6:"821340";i:16;s:35:"SGGBAA2069_c11820;SGGBAA2069_c11830";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015215.1";i:2;s:60:"Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1806915-1807168";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1806263-1806833";i:10;s:1:"-";i:11;s:17:"SGGBAA2069_c17490";i:12;s:0:"";i:13;s:17:"SGGBAA2069_c17490";i:14;s:6:"Operon";i:15;s:6:"821471";i:16;s:35:"SGGBAA2069_c17490;SGGBAA2069_c17500";i:17;s:0:"";i:18;s:15:"View Structure ";}}